Sequence
atgc intronic sequence ATGC exonic sequence...ctatgcagctgaatgtcattataactgtccaaattgctctgttatcttctactatcctcttcgcatgagtaatgtgtgtactatactttgtttaaaacagCATAAATGCTACATTGTTGCTACATGCGATCGAGACTTGAAGCGAAGGATTCGCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02690.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA03G41500.1 (Glycine max), 3'ss of exon 5
ctatgcagctgaatgtcattataactgtccaaattgctctgttatcttctactatcctcttcgcatgagtaatgtgtgtactatactttgtttaaaacagCATAAATGCTACATTGTTGCTACATGCGATCGAGACTTGAAGCGAAGGATTCGCAAG
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aatttcaaccaaaagtgccagaaacacacacgtctgctgtgtatttcattctcttctttttggtccaattcatttacgcaaaccattttcttggaatcagCATAAGTGCTACATTGTTGCAACATGTGATCGGGACTTGAAGAGGAGGATCCGGAAG
upper sequence: Vv15s0046g02690.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G31740.1 (Glycine max), 3'ss of exon 7
--ctatgcagctgaatgtcattataac-tgtccaaattgctctgttatcttctactatcctcttcgcatgagtaatgtgtgtactatactttgtttaaaacagCATAAATGCTACATTGTTGCTACATGCGATCGAGACTTGAAGCGAAGGATTCGCAAG
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ataatttcaaataaaagtaatgataacacattgttgctgcttatttctttgtgttttttgttttcccat---ttattcacacaaaccattttcttggaaacagCACAAGTGCTACATTGTTGCAACATGTGATCGGGACTTGAAGAGGAGAATTCGGAAG
upper sequence: Vv15s0046g02690.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G38690.2 (Glycine max), 3'ss of exon 7
-------ctatgcagctgaatgtcattataactgtccaaattgctctgttatcttctactatcctcttcgcatgagtaatgtgtgtactatactttgtttaaaacagCATAAATGCTACATTGTTGCTACATGCGATCGAGACTTGAAGCGAAGGATTCGCAAG
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tagaaatactttcaagtaaaagtaatgataaca--cgtatttgctgc-ttatttctttgtgtttttccccctttattcacataaac----catttttttggaaacagCACAAGTGCTACATTGTTGCAACATGTGATCGGGACTTGAAGAGGAGAATTCGGAAG
upper sequence: Vv15s0046g02690.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT2G46230.2 (Arabidopsis thaliana), 3'ss of exon 6
-----------------------------------------ctatgcagctgaatgtcattataactgtccaaattgctctgttatcttctactatcctcttcgcatgagtaatgtgtgtactatactttgtttaaaacagCATAAATGCTACATTGTTGCTACATGCGATCGAGACTTGAAGCGAAGGATTCGCAAG-------------------------------------------
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gtaatacatcgttcccggcttgttgaactttgtattcaagactctgaaatgatataccgatgctctggtcccatggttcttggtgtatac-attttatcttttgtatgtttc-tgtaatattcatttctcataatatacagCATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATTCGAAAGGTAAAGATAGTTTGTTGTATCAGTGCTCTTGTTTATATCCATG
upper sequence: Vv15s0046g02690.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT2G46230.1 (Arabidopsis thaliana), 3'ss of exon 6
-----------------------------------------ctatgcagctgaatgtcattataactgtccaaattgctctgttatcttctactatcctcttcgcatgagtaatgtgtgtactatactttgtttaaaacagCATAAATGCTACATTGTTGCTACATGCGATCGAGACTTGAAGCGAAGGATTCGCAAG
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gtaatacatcgttcccggcttgttgaactttgtattcaagactctgaaatgatataccgatgctctggtcccatggttcttggtgtatac-attttatcttttgtatgtttc-tgtaatattcatttctcataatatacagCATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATTCGAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttctactatcctcttcgcatgagtaatgtgtgtactatactttgtttaaaacagCATAAATGCTACATTGTTGCTACATGCGATCGAGACTTGAAGCGAAGGATTCGCAAG
ctttgttt CT-rich tract
tatactttgtttaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctatgcagctgaatgtcattataactgtccaaattgctctgttatcttctactatcctcttcgcatgagtaatgtgtgtactatactttgtttaaaacagCATAAATGCTACATTGTTGCTACATGCGATCGAGACTTGAAGCGAAGGATTCGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
ctatgca
- - - - - gaatgtc
- - - - - - - - - - - - ctgtcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgt