Sequence
atgc intronic sequence ATGC exonic sequence...ttgggcattacttcattgcatttaaattcaaaatgttgtttgaaattggatgatttgaagtcctcagcttccttttccccccccccccctttttttccagGGTTTATCCCAACATCACAAACGATTGCGTTCTTTGGCCGATCATGTTCCTCATGGTTTCAGGAAGAAAAACCTTTTTGAAGTTCTTATCAGGAATAATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02510.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA03G01150.1 (Glycine max), 3'ss of exon 3
ttgggcattacttcattgcatttaaattca-aaatgttgtttgaaattggatgatttgaagtcctcagcttccttt--tccccccccccccctttttttccagGGTTTATCCCAACATCACAAACGATTGCGTTCTTTGGCCGATCATGTTCCTCATGGTTTCAGGAAGAAAAACCTTTTTGAAGTTCTTATCAGGAATAATG
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---gacaggttgttatggccgtaaaatccttaaatactacttttttggatattacttggtggttcaatgtatctttagtaacttggttaaaattatattatagGGTTTATCTCAGCAGCACAAGCGATTACGCTCTTTGGCTGATCATGTTCCTCATGGTTATAAAAGGGCATCACTTTTAGAGGTTCTTATCAAGAATAATG
upper sequence: Vv15s0046g02510.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G39550.1 (Glycine max), 3'ss of exon 1
ttgggcattacttcattgcatttaa-attcaaaatgttgtttgaaattggatgatttga--agtcctcagcttccttttccccccccccccctttttttccagGGTTTATCCCAACATCACAAACGATTGCGTTCTTTGGCCGATCATGTTCCTCATGGTTTCAGGAAGAAAAACCTTTTTGAAGTTCTTATCAGGAATAATG---
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---aaacttacgcattagtgcttattatctgggatgttttctgccactagtttttttttttattgttttgttttgtttttttaactcaattatttttttatagGGCTTATCTCAACAGCACAAGCGATTACGATCTTTGGCAGATCTTGTTCCTCATG---TTAGAAGGAAATCACTTTTAGAGGTTCTTATTAGGAATAATGTTC
upper sequence: Vv15s0046g02510.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT4G00450.1 (Arabidopsis thaliana), 3'ss of exon 6
---------------------------------ttgggcattacttcattg-----catttaaattcaaaatgttgtttgaa-attggatgatttgaagtcctcagcttccttttccccccccccccctttttttccagGGTTTATCCCAACATCACAAACGATTGCGTTCTTTGGCCGATCATGTTCCTCATGGTTTCAGGAAGAAAAACCTTTTTGAAGTTCTTATCAGGAATAATG---
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gtacctggccttttattatgcttatctaaacttcttaacaattctcctctgatccatgtttgttgctgactcgtggcataactgccatatattcttaaagaagaatacttaactcattcttgctctcattttttcacagAGTTTATCACAACAGCACAAACGATTGCGCTCTTTGGCTGATAACATTCCT---GGATATAGGAGAAAAACCTTATTTGAAGTCCTTATAAGGAACAATGTCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggatgatttgaagtcctcagcttccttttccccccccccccctttttttccagGGTTTATCCCAACATCACAAACGATTGCGTTCTTTGGCCGATCATGTTCCTCATGGTTTCAGGAAGAAAAACCTTTTTGAAGTTCTTATCAGGAATAATG
tcctcagcttcctttt CT-rich tract
ttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgggcattacttcattgcatttaaattcaaaatgttgtttgaaattggatgatttgaagtcctcagcttccttttccccccccccccctttttttccagGGTTTATCCCAACATCACAAACGATTGCGTTCTTTGGCCGATCATGTTCCTCATGGTTTCAGGAAGAAAAACCTTTTTGAAGTTCTTATCAGGAATAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- -ggcatta
- - - - - - -cattgca
- - - - - - - - - - - - - -tcaaaat
- - - - - - - - - - - - - - - - - - - - - - - tggatga