1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attatgaccacttactcttcacaatgaatagattgaatgcatcaactaaaggctcccataaaattatgatacatcacaccattgtttgatcaatctgcagGCTGTTTTGGATGTGCGAGTCGAGATTCTTGCAGCCGTTGGAGAAGAAGATGGAGTGACTCGCTGGCTTGATTAGTTTTGCGGTCACACGCCCAACCTAT
species | Vitis vinifera |
transcript | Vv15s0046g02250.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
ctaaaggctcccataaaattatgatacatcacaccattgtttgatcaatctgcagGCTGTTTTGGATGTGCGAGTCGAGATTCTTGCAGCCGTTGGAGAAGAAGATGGAGTGACTCGCTGGCTTGATTAGTTTTGCGGTCACACGCCCAACCTAT
ataaaattatgataca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attatgaccacttactcttcacaatgaatagattgaatgcatcaactaaaggctcccataaaattatgatacatcacaccattgtttgatcaatctgcagGCTGTTTTGGATGTGCGAGTCGAGATTCTTGCAGCCGTTGGAGAAGAAGATGGAGTGACTCGCTGGCTTGATTAGTTTTGCGGTCACACGCCCAACCTAT
- - - -ccactta
- - - - - - - - cttcaca
- - - - - - - - - - - - -gaataga
- - - - - - - - - - - - - - - - - gaatgca
- - - - - - - - - - - - - - - - - - - - - -aactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacacca