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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagtttctgctttctttgaccataaaatttgagtttttaaatctcattatcaacatcaacttcaaatcctttcatctatgcagTATGAGAGGTCTTTGGATTTTGATACAAATCCACTCTTCGCTCTTCTGCACGAGTCTATATACTGTCAG

Basic information

species Vitis vinifera
transcript Vv15s0046g02160.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g02160.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G61540.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaagagtttctgctttctttgaccataaaatttgagtttttaaatctcattatcaa--catcaacttcaaatcctt--tcatctatgcagTATGAGAGGTCTTTGGATTTTGATACAAATCCACTCTTCGCTCTTCTGCACGAGTCTATATACTGTCAG
|||||||   |       ||||         |||  ||| | |  ||  || |  ||  ||  |   | | |   ||  || |   |||||| |||||| |       |||||||||||||||||| |  |||||||| |||||| | ||||||||| ||
gtaagagacccacaaaaatttgtt-----gttttctgttctcagctcaaataaggaattcaatagtctgagacattttatcgttgctgcagTTTGAGAGTTGGCATTCTTTTGATACAAATCCACTATATGCTCTTCTCCACGAGGCCATATACTGTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110375135|gb|EC940096.1|EC940096
EST:     TAATCATCCCAGGAGCGCAAAAACAGATCAGTTACTACTTCTTGACTGCT                         TATGAGAGGTCTTTGGATTTTGATACAAATCCACTCTTCGCTCTTCTGCAT
genomic: TAATCATCCCAGGAGCGCAAAAACAGATCAGTTACTACTTCTTGACTGCTgtaagagttt ... atctatgcagTATGAGAGGTCTTTGGATTTTGATACAAATCCACTCTTCGCTCTTCTGCAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgagtttttaaatctcattatcaacatcaacttcaaatcctttcatctatgcagTATGAGAGGTCTTTGGATTTTGATACAAATCCACTCTTCGCTCTTCTGCACGAGTCTATATACTGTCAG
                                      tcctttcatct  CT-rich tract
     tttttaaatctcatta  TA-rich tract