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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacataatttgctaatattgaaaacagctagaggttatttgtagcatttagttgtgattttccacatgatttagtctcttatttttctgcattcttctgctttcctcattactgtcaagcgttctctaatagtgactaacaatgttcatttgcttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTGTCTATTGTGATGATGACACTGTATCCTATTCTAATAGCCCCACTTTTCA

Basic information

species Vitis vinifera
transcript Vv15s0046g02040.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g02040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G39150.1 (Glycine max), 3'ss of exon 6
gtaacataatttgctaatattgaaaacagctagaggttatttgtagcatttagttgtgattttccacatgatttagtctcttatttttctgcattcttctgctttcctcattactgtcaagcgttctctaatagtgactaacaatgttcatttgcttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTGTCTATTGTGATGATGACACTGTATCCTATTCTAATAGCCCCACTTTTCA
     | ||| | ||  |||| |||| | |||    | | || ||  | |||| | |||| ||         |   | || ||  | |      | |   | | |  |   |  ||       || |||| |          ||||||||| ||  |  ||||||||||||||||| || |||||||||||||||||||  |||| ||||  ||| ||||||||||||||||| || |||||  | |||||||| ||||| ||||
---gtaaaatcttctgctatttaaaataacta----tcactt-taaaacttagct-tgatatt---------tggatttcctagctgttcttgatttagagttatttttggttttg------attttctattt--------taatgttcatgtgaattttggcagAAAGGAGGTCCATACTTGGCCATCTATCTTTGGGTTTTTACGTTTGGTCTTTCTATTGTGATGATGACCCTTTATCCAGTACTAATAGCTCCACTCTTCA

upper sequence: Vv15s0046g02040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G47190.1 (Glycine max), 3'ss of exon 5
gtaacataatttgctaatattgaaaacagctagaggttatttgtagcatttagttgtgattttccacatgatttagtctcttatttttctgcattcttctgctttcctcattactgtcaagcgttctctaatagtgactaacaatgttcatttgcttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTGTCTATTGTGATGATGACACTGTATCCTATTCTAATAGCCCCACTTTTCA-
                                                            |    || |   ||  | | |   ||||||   | ||  || |||     ||| | |  |     || | ||  |   |   ||||||||| ||  |  ||||||||||||||||| || |||||||||||||||||||  ||||  |||  ||| ||||||||||||||||| || |||||  | |||||||| ||||| |||| 
------------------------------------------------------------taaaaacttagcttgatatttggattttctagctgctcttgttttaga-gttatttttga-----ctttgattttctattttaatgttcatgtgaattttggcagaAAGGAGGTCCATACTTGGCCATCTATCTTTGGGCTTTTACATTTGGTCTTTCTATTGTGATGATGACCCTTTATCCAGTACTAATAGCTCCACTCTTCAA

upper sequence: Vv15s0046g02040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT4G01320.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaacataatttgctaatattgaaaacagctagaggttatttgtagcatttagttg-tgattttccacatgatttagtctcttatttttctgcattcttctgctttcctcattactgtcaagcgttctctaatagtgactaacaatgttcatttgcttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTGTCTATTGTGATGATGACACTGTATCCTATTCTAATAGCCCCACTTTTCA
         |||| | ||  || |  || ||      |   | |  ||  | | ||   ||| ||||     | |   ||   |  ||| |      ||  |  ||    |||        || |||||| |   |||     | | |  || |  ||     |||||||||||||||||| | ||||||||||| |||| ||| |||||||| |||||| | |||||||||||  | || ||  |  | ||||| || || ||||
--------gtttgatgattctggattcatcttatttctgagtttttcacatggatgactattctccattgagtgtgagcttcaaagtttttag---ttttcgtgttaaaaatttaaaatttgc-ttctctgagcatga-----agtttctatctttttc----cagAAAGGAGGTCCTTATCTTGCCATCTATCTGTGGGCATTCATGTTTATCCTGTCTCTAGTGATGATGACTATATACCCGGTCTTGATAGCACCGCTCTTCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349814570|gb|FQ399210.1|FQ399210
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCCATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|30304044|gb|CB980838.1|CB980838
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|351052220|gb|FQ452374.1|FQ452374
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|351043081|gb|FQ451254.1|FQ451254
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|110700064|gb|EE077676.1|EE077676
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|351012828|gb|FQ430391.1|FQ430391
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|351045038|gb|FQ449292.1|FQ449292
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|30304107|gb|CB980901.1|CB980901
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|351040629|gb|FQ438173.1|FQ438173
EST:     CCATTTTACCTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCCATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|351033796|gb|FQ447834.1|FQ447834
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|349820667|gb|FQ408496.1|FQ408496
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCCATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|351044625|gb|FQ443156.1|FQ443156
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|351043828|gb|FQ452622.1|FQ452622
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|351029807|gb|FQ427647.1|FQ427647
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactgtcaagcgttctctaatagtgactaacaatgttcatttgcttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTGTCTATTGTGATGATGACACTGTATCCTATTCTAATAGCCCCACTTTTCA
                         gactaac  putative branch site (score: 1)
                                        tttgctt  putative PPT
                tctaata  TA-rich tract