Sequence
atgc intronic sequence ATGC exonic sequencegtttctttctgtattttagtgtgtgaaatttgtctcttattgatttaattgaaattctgaagatcctttttggtatttagGTTCGTCAAATCTGTCATATTGCTTTGAAAAGAGATCATGAGTTTATCAATACAGTTCAAGAGGGTAGTGAAGAGACACACTCACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g01010.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G041732_T01 (Zea mays), 3'ss of exon 5
gtttctttctgtattttagtgtgtgaaatttgtctcttattgatttaattgaaattctgaagatcctttttggtat-ttagGTTCGTCAAATCTGTCATATTGCTTTGAAAAGAGATCATGAGTTTATCAATACAGTTCAAGAGGGTAGTGAAGAGACACACTCACAG
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gtatcactg-gtatacttgc-tataattctttgctttgcttggtcggtgtgccatt----agtttctattcttcatgctagGTTCGTCAAGTATGTCATATTGCCATGAAAAGAGATCTTGAATTCGTCAACACTGTTCAAGAAGGAAGTGAGGAAACACACTCTCAG
upper sequence: Vv15s0046g01010.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G06240.1 (Glycine max), 3'ss of exon 5
------------------gtttctttctg--tattttagtgtgtgaa-atttgtctcttatt--gatttaattgaaattctgaagatccttt-ttggtattt------agGTTCGTCAAATCTGTCATATTGCTTTGAAAAGAGATCATGAGTTTATCAATACAGTTCAAGAGGGTAGTGAAGAGACACACTCACAG
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gtacgtatgtcttcttttttttccttttactttttttagtgtatggttgtatgtttcttgtttagaaaagatagaagtaccaaacttattttgttattattgtggcaaagGTCCGTCAAGTATGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAATACAGTTCAAGAGGGAACGGAGGAGACACATTCACAG
upper sequence: Vv15s0046g01010.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G02880.1 (Glycine max), 3'ss of exon 5
-----------------gtttctttctgtattttagtgtgtgaa-atttgtctcttattgatttaattgaaattctgaagatcctttttggtattta-------------gGTTCGTCAAATCTGTCATATTGCTTTGAAAAGAGATCATGAGTTTATCAATACAGTTCAAGAGGGTAGTGAAGAGACACACTCACAG
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gtatgcatgtctttttttttcctttaacttttttagtgtatggttgtatgttacttgtttagaaaagatagaagtaccaagcttattttggtatttactattgtggcaaagGTCCGTCAAGTATGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAATACAGTGCAAGAGGGAACTGAGGAGACACATTCACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110694662|gb|EE071963.1|EE071963EST: TTCCAAAACAGCGACAAACACTGCTGTTCTCTGCCACAGTCGCAGAAGAG GTTCGTCAAATCTGTCATATTGCTTTGAAAAGAGATCATGAGTTTATCAAT
genomic: TTCCAAAACAGCGACAAACACTGCTGTTCTCTGCCACAGTCCCAGAAGAGgtttctttct ... tggtatttagGTTCGTCAAATCTGTCATATTGCTTTGAAAAGAGATCATGAGTTTATCAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatttgtctcttattgatttaattgaaattctgaagatcctttttggtatttagGTTCGTCAAATCTGTCATATTGCTTTGAAAAGAGATCATGAGTTTATCAATACAGTTCAAGAGGGTAGTGAAGAGACACACTCACAG
tccttttt CT-rich tract
tcttattgatttaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttctttctgtattttagtgtgtgaaatttgtctcttattgatttaattgaaattctgaagatcctttttggtatttagGTTCGTCAAATCTGTCATATTGCTTTGAAAAGAGATCATGAGTTTATCAATACAGTTCAAGAGGGTAGTGAAGAGACACACTCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA