1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atgttgctaatggaaacgtaatcctggtttttcttaacatgttttatgttttgcttccttgaagttctgctaatggcaattgttttttttgtttttgaagTATGGTGAGGGACACCAGCACAGCAGATGTAGCACCTGTTATTCCACCAAGCAGTGCCATGTCATCCATGTCAGAGATGCCTGTTAGTCCTACTTCAGTT
species | Vitis vinifera |
transcript | Vv15s0046g00990.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTCCCTGCACCAGGCAATTTCCACCCTATGCGGATGAATTCCGGAAATGA TATGGTGAGGGACACCAGCACAGCAGATGTAGCACCTGTTATTCCACCAAG
genomic: GTCCCTGCACCAGGCAATTTCCACCCTATGCGGATGAATTCCGGAAATGAgtaagaaaat ... gtttttgaagTATGGTGAGGGACACCAGCACAGCAGATGTAGCACCTGTTATTCCACCAAG
atgttttgcttccttgaagttctgctaatggcaattgttttttttgtttttgaagTATGGTGAGGGACACCAGCACAGCAGATGTAGCACCTGTTATTCCACCAAGCAGTGCCATGTCATCCATGTCAGAGATGCCTGTTAGTCCTACTTCAGTT
tgctaat putative branch site (score: 2)
ttgttttttttgtttt putative PPT
aattgttttttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttgctaatggaaacgtaatcctggtttttcttaacatgttttatgttttgcttccttgaagttctgctaatggcaattgttttttttgtttttgaagTATGGTGAGGGACACCAGCACAGCAGATGTAGCACCTGTTATTCCACCAAGCAGTGCCATGTCATCCATGTCAGAGATGCCTGTTAGTCCTACTTCAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - -gctaatg
- - - - - - -aaacgtaa
- - - - - - - - - - - cctggtt
- - - - - - - - - - - - - - - - - - acatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgctaa