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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtattcatcaattttcctttcttcactttcatcacctttcatcacttgctgcaaccatcaagagtatagaatgatcgactttgatatcagttgtattgaactaatccccatgtccataatggcagGTAATTGGTTCATATGTGGGCATTGCAACTGTAGGAATCTTCATTTTGTGGTACACCCAGGCTTCATTTCTTGGTATCAATCTTGTGAGTGATGGGCACA

Basic information

species Vitis vinifera
transcript Vv15s0046g00040.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g00040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G05890.1 (Glycine max), 3'ss of exon 6
gttagtattcatcaattttcctttcttcactttcatcacctttcatcacttgctgcaaccatcaagagtatagaatgatcgactttgatatcagttgtattgaactaatccccatgtccataatggcagGTAATTGGTTCATATGTGGGCATTGCAACTGTAGGAATCTTCATTTTGTGGTACACCCAGGCTTCATTTCTTGGTATCAATCTTGTGAGTGATGGGCACA
                        | ||| | |  | ||  ||      | |    ||  ||  |  ||||| | | ||  | | |  |||   |   || | |   |  |   ||  | | |   |||||||||||||| ||||||||  | ||||| || || || ||  | ||||||||||| || || || |||||||| |||||||||||||||||||| ||||
-----------------------acgtcaatgt-gtgactattagatgatagtgtaaaatattgat-gtataca-taatttagtctagtatttatcacatggtaaccaaactagtgctcgtga---cagGTAATTGGTTCCTATGTGGGACTAGCAACAGTTGGCATTTTTGTCTTGTGGTACACTCAAGCATCTTTTCTTGGCATCAATCTTGTGAGTGATGGTCACA

upper sequence: Vv15s0046g00040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G02490.1 (Glycine max), 3'ss of exon 8
gttagtattcatcaattttcctttcttcactttcatcacctttcatcacttgctgcaaccatcaagagtatagaatgatcgactttgatatcagttgtattgaactaatccccatgtccataatggcagGTAATTGGTTCATATGTGGGCATTGCAACTGTAGGAATCTTCATTTTGTGGTACACCCAGGCTTCATTTCTTGGTATCAATCTTGTGAGTGATGGGCACA
                          | | | | |          | |  || | |||    |     ||   |||  |  ||| |  |||   |   || | |   |  |  |||  ||| |   |||||||||||||| ||||||||  | || || || || || ||  | ||||||||||| || || || |||||||| ||||| |||||||||||||| ||||
-------------------------gtaattattaggtgagagtgtaaaatgtt-caatgtacgttcatacgcaattttttactcttgtatttatcacatggtaacgaaactaatgctcatga---cagGTAATTGGTTCCTATGTGGGACTAGCCACAGTTGGCATTTTTGTCTTGTGGTACACTCAAGCATCTTTTCTTGGCATCAACCTTGTGAGTGATGGTCACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatcgactttgatatcagttgtattgaactaatccccatgtccataatggcagGTAATTGGTTCATATGTGGGCATTGCAACTGTAGGAATCTTCATTTTGTGGTACACCCAGGCTTCATTTCTTGGTATCAATCTTGTGAGTGATGGGCACA
                            aactaat  putative branch site (score: 2)
         tttgatat  TA-rich tract