1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tagtcctttactgctgtattacgtctttcataaattttattttcttgtttttacgttttttgtttaaatatcattcattattgtggcttctgcattttagCATGCATACAACCCAGATGAGGAGTATGAAGAAGTGGAATCCCAGTTGCGGGCACATTTGGAATCTTTTCTAGAAACTGCAAGATCATTCAATGTGATTT
species | Vitis vinifera |
transcript | Vv15s0024g01470.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGAAGG-TGATGATTTGGCATCAAAG CATGCATACAACCCAGATGAGGAGTATGAAGAAGTGGAATCCCAGTTGCGGEST: gi|110700983|gb|EE078116.1|EE078116
genomic: AGAAGGTTGATGATTTGGCATCAAAGgtttattctg ... tgcattttagCATGCATACAACCCAGATGAGGAGTATGAAGAAGTGGAATCCCAGTTGCGG
EST: TGATTTGGCATCAAAG CATGCATACAACCCAGATGAGGAGTATGAAGAAGTGGAATCCCAGTTGCGGEST: gi|110383268|gb|EC947629.1|EC947629
genomic: TGATTTGGCATCAAAGgtttattctg ... tgcattttagCATGCATACAACCCAGATGAGGAGTATGAAGAAGTGGAATCCCAGTTGCGG
EST: CAAAGTTACTCTTAAATCTTCAACAGAAGGTTGATGATTTGGCATCAAAG CATGCATACAACCCAGATGAGGAGTATGAAGAAGTGGAATCCCAGTTGCGGEST: gi|110373786|gb|EC938134.1|EC938134
genomic: CAAAGTTACTCTTAAATCTTCAACAGAAGGTTGATGATTTGGCATCAAAGgtttattctg ... tgcattttagCATGCATACAACCCAGATGAGGAGTATGAAGAAGTGGAATCCCAGTTGCGG
EST: CAAAGTTACTCTTAAATCTTCAACAGAAGGTTGATGATTTGGCATCAAAG CATGCATACAACCCAGATGAGGAGTATGAAGAAGTGGAATCCCAGTTGCGGEST: gi|110375221|gb|EC940185.1|EC940185
genomic: CAAAGTTACTCTTAAATCTTCAACAGAAGGTTGATGATTTGGCATCAAAGgtttattctg ... tgcattttagCATGCATACAACCCAGATGAGGAGTATGAAGAAGTGGAATCCCAGTTGCGG
EST: CAAAGTTACTCTTAAATCTTCAACAGAAGGTTGATGATTTGGCATCAAAG CATGCATACAACCCAGATGAGGAGTATGAAGAAGTGGAATCCCAGTTGCGG
genomic: CAAAGTTACTCTTAAATCTTCAACAGAAGGTTGATGATTTGGCATCAAAGgtttattctg ... tgcattttagCATGCATACAACCCAGATGAGGAGTATGAAGAAGTGGAATCCCAGTTGCGG
tgtttttacgttttttgtttaaatatcattcattattgtggcttctgcattttagCATGCATACAACCCAGATGAGGAGTATGAAGAAGTGGAATCCCAGTTGCGGGCACATTTGGAATCTTTTCTAGAAACTGCAAGATCATTCAATGTGATTT
cttctgc CT-rich tract
ttttttgtttaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtcctttactgctgtattacgtctttcataaattttattttcttgtttttacgttttttgtttaaatatcattcattattgtggcttctgcattttagCATGCATACAACCCAGATGAGGAGTATGAAGAAGTGGAATCCCAGTTGCGGGCACATTTGGAATCTTTTCTAGAAACTGCAAGATCATTCAATGTGATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - -actgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggcttc