Sequence
atgc intronic sequence ATGC exonic sequencegtgtcctgttgatgactgttctttcttgaatcttctgttctagttttgcagagcaatctgatgaaggtactaaaatatcttttctccttggattggtttcctattagGTGACTATATCTGGAACTCCGGTTGGACCTCTTGTCGCATTGGCTTTTAAATTGGAAGAAGGGCGCTTTGGTCAATTGACATACCTAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G16460.1 (Glycine max), 3'ss of exon 6
gtgtcctgttgatgactgttctttcttgaatcttctgttctagttttgcagagcaatctgatgaaggtactaaaatatcttttctccttggattggtttcctat-tagGTGACTATATCTGGAACTCCGGTTGGACCTCTTGTCGCATTGGCTTTTAAATTGGAAGAAGGGCGCTTTGGTCAATTGACATACCTAAG
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gagatacaatcacattgatttgtgatatgcttgcttgtttcagttacccttgtttgtct--------tgctatatattggattattgtaatattctattcttatctagGTTGAGTTGCGTGGAAGTCCTGATGGGCCACTTGTGGCATTGGCTTTCAAGTTGGAGGAAGGGCGGTTTGGTCAGTTAACATATCTAAG
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G14800.1 (Glycine max), 3'ss of exon 1
gtgtcctgttgatgactgttctttcttgaatcttctgttctagttttgcagagcaatctgatgaaggtactaaaatatcttttctccttggattggtttcctat-tagGTGACTATATCTGGAACTCCGGTTGGACCTCTTGTCGCATTGGCTTTTAAATTGGAAGAAGGGCGCTTTGGTCAATTGACATACCTAAG
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gagatacaatcatattgatttgtgatatgcttgtatgtttcagttacccttgtttgtct--------tgctatattttgggttattgtaacattctattcttatctagGTTGAGTTGCGTGGAAGTCCTGATGGGCCACTTGTGGCATTGGCTTTCAAGTTGGAGGAAGGGCGGTTTGGTCAGTTAACATATCTAAG
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT2G45030.1 (Arabidopsis thaliana), 3'ss of exon 6
gtgtcctgttgatgactgttctttcttgaatcttctgttctagttttgcagagcaatctgatgaaggtactaaaatatcttttctccttggattggtttcctattagGTGACTATATCTGGAACTCCGGTTGGACCTCTTGTCGCATTGGCTTTTAAATTGGAAGAAGGGCGCTTTGGTCAATTGACATACCTAAG
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------------------------------------gtactcaacttgtaattttgttttactggagaa--aatgtactggttctaaataattgagtttc-----agGTAACCTTGACTGGATCTCCAGATGGACCTCTTGTGGCGCTGGCTTTCAAATTAGAGGAGGGTCGTTTTGGTCAATTGACATATTTGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71863690|gb|DT012745.1|DT012745EST: CTACTGAAGTTAGCAACTATGCTCTTGACCAAAACAAGAATGAAGAGAAG GTGACTTTATCTGGAACTCCGGTTGGACCTCTTGTTGCATTGGCTTTTAAA
genomic: CTACTGAAGTTAGCAACTATGCTCTTGACCAAAACAAGAATGAAGAGAAGgtgtcctgtt ... ttcctattagGTGACTATATCTGGAACTCCGGTTGGACCTCTTGTCGCATTGGCTTTTAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcaatctgatgaaggtactaaaatatcttttctccttggattggtttcctattagGTGACTATATCTGGAACTCCGGTTGGACCTCTTGTCGCATTGGCTTTTAAATTGGAAGAAGGGCGCTTTGGTCAATTGACATACCTAAG
tactaaa putative branch site (score: 1)
tttcctatt putative PPT
tactaaaatatctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtcctgttgatgactgttctttcttgaatcttctgttctagttttgcagagcaatctgatgaaggtactaaaatatcttttctccttggattggtttcctattagGTGACTATATCTGGAACTCCGGTTGGACCTCTTGTCGCATTGGCTTTTAAATTGGAAGAAGGGCGCTTTGGTCAATTGACATACCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG