1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cagggtcaatttatatttcatcatgtttttcatctttttggatagacactcttaatatttttagggatgacaatagtaaccctgttcatgtcatttgcagCCTGATACGATTACGGGAGACATTGTTTTTGTGTTGCAACTGAAGGACCATGCCAAGTTCAAGCGGAAATATGACGATCTCTACGTAGAGCATACCCTCA
species | Vitis vinifera |
transcript | Vv15s0021g02090.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAATGCAGCATGGTGAGAGGATTGTGTTTCAAGGAGAAGCCGATCAAGCG CCTGATACGATTACGGGAGACATTGTTTTTGTGTTGCAACTGAAGGACCATEST: gi|26264557|gb|CA815620.1|CA815620
genomic: GAATGCAGCATGGTGAGAGGATTGTGTTTCAAGGAGAAGCCGATCAAGCGgtaagtgatt ... tcatttgcagCCTGATACGATTACGGGAGACATTGTTTTTGTGTTGCAACTGAAGGACCAT
EST: TGTTTCAAGGAGAAGCCGATCAAGCG CCTGATACGATTACGGGAGACATTGTTTTTGTGTTGCAACTGAAGGACCATEST: gi|71857103|gb|DT006158.1|DT006158
genomic: TGTTTCAAGGAGAAGCCGATCAAGCGgtaagtgatt ... tcatttgcagCCTGATACGATTACGGGAGACATTGTTTTTGTGTTGCAACTGAAGGACCAT
EST: GAATGCAGCATGGTGAGAGGATTGTGTTTCAAGGAGAAGCCGATCAAGCG CCTGATACGATTACGGGAGACATTGTTTTTGTGTTGCAACTGAAGGACCATEST: gi|29782022|gb|CB346980.2|CB346980
genomic: GAATGCAGCATGGTGAGAGGATTGTGTTTCAAGGAGAAGCCGATCAAGCGgtaagtgatt ... tcatttgcagCCTGATACGATTACGGGAGACATTGTTTTTGTGTTGCAACTGAAGGACCAT
EST: GAATGCAGCATGGTGAGAGGATTGTGTTTCAAGGAGAAGCCGATCAAGCG CCTGATACGATTACGGGAGACATTGTTTTTGTGTTGCAACTGAAGGACCAT
genomic: GAATGCAGCATGGTGAGAGGATTGTGTTTCAAGGAGAAGCCGATCAAGCGgtaagtgatt ... tcatttgcagCCTGATACGATTACGGGAGACATTGTTTTTGTGTTGCAACTGAAGGACCAT
acactcttaatatttttagggatgacaatagtaaccctgttcatgtcatttgcagCCTGATACGATTACGGGAGACATTGTTTTTGTGTTGCAACTGAAGGACCATGCCAAGTTCAAGCGGAAATATGACGATCTCTACGTAGAGCATACCCTCA
tagtaac putative branch site (score: 1)
ttaatattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagggtcaatttatatttcatcatgtttttcatctttttggatagacactcttaatatttttagggatgacaatagtaaccctgttcatgtcatttgcagCCTGATACGATTACGGGAGACATTGTTTTTGTGTTGCAACTGAAGGACCATGCCAAGTTCAAGCGGAAATATGACGATCTCTACGTAGAGCATACCCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - catcatg
- - - - - - - - - - - - - - - - - - - tggatag