Sequence
atgc intronic sequence ATGC exonic sequence...agcagattcaaatttctttgtagttttgaaattttgttcataaaagcagagttaatgatcatcaacttaaatgttcttctgtttatttgtttggtaacagGAGCCACAATTGACAGCCTGCCAGCCATTTGATGTGTATACAAAACCATTCTCCCTATGATTATTCATGTGTGTGTAGCGGTTGAATAAAGTCGAACAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g00990.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G035928_T01 (Zea mays), 3'ss of exon 4
agcagattcaaatttctttg-tagttttgaaattttgttcataaaagcagagttaatgatcatcaacttaaatgttcttctgtttat-ttgtttggtaacagGAGCCACAATTGACAGCCTGCCAGCCATTTGATGTGTATACAAAACCATTCTCCCTATGAT-TATTCAT-GTGTGTGTAGCGGTTGAATAAAGTCGAACAGA
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-------gtaaattcttgtgctcgatatgaaactc-gtcggtttattca-agttatcgtccg-cgtttcatattggtagctgtttgcgttgttctgtg-cagGAGCCACAACTGACGGCGTGCGAGCCATTTGATGTCTATGCGAAGCCCTTCTCCCTATGACGTGTTCATAGTATTGCCCAATGTACTATATATCTCCTCC--
upper sequence: Vv15s0021g00990.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G155422_T01 (Zea mays), 3'ss of exon 4
agcagattcaaatttctttgtagttttgaaattttgttcataaaagcagagttaatgatcatcaacttaaatgttcttctgtttatttgtttggtaacagGAGCCACAATTGACAGCCTGCCAGCCATTTGATGTGTATACAAAACCATTCTCCCTATGAT-TATTCATGTGTGTGTAGCGGTTGAATAAAGTCGAACAGA
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-gtaaattc----ttgagcttgatatggaaatc--gtcggtttattca-agttatcg-tcagcgtttcatatcggtagctgtttgcgttgttcgtg-cagGAGCCACAACTGACGGCATGCGAGCCATTTGATGTCTATGCGAAGCCCTTCTCCCTATGACGCGTTCATGGTGCTGCTGCTGCCCACCCATTTCACGTTA-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110358495|gb|EC922751.1|EC922751EST: TCATTTCGATGCTTTTGACTGGAGGCAGTGTCAGCGGTGGCTTGAGACAG GAGCCACAATTGACAGCCTGCCAGCCATTTGATGTGTATACAAAACCATTC
genomic: TCATTTCGATGCTTTTGACTGGAGGCAGTGTCAGCGGTGGCTTGAGACAGgtattggttc ... ttggtaacagGAGCCACAATTGACAGCCTGCCAGCCATTTGATGTGTATACAAAACCATTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcagagttaatgatcatcaacttaaatgttcttctgtttatttgtttggtaacagGAGCCACAATTGACAGCCTGCCAGCCATTTGATGTGTATACAAAACCATTCTCCCTATGATTATTCATGTGTGTGTAGCGGTTGAATAAAGTCGAACAGA
agttaat putative branch site (score: 4)
tttgttt putative PPT
tttatttgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agcagattcaaatttctttgtagttttgaaattttgttcataaaagcagagttaatgatcatcaacttaaatgttcttctgtttatttgtttggtaacagGAGCCACAATTGACAGCCTGCCAGCCATTTGATGTGTATACAAAACCATTCTCCCTATGATTATTCATGTGTGTGTAGCGGTTGAATAAAGTCGAACAGA
- - - - - - - - - - - - - - - - - - - - -aaaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcaac