Sequence
atgc intronic sequence ATGC exonic sequence...tagattcatttgatttgctactgctaattgatctgttttccaaaaatggaaaagcaaaatcagaaacaagcaagataatctatttattattttgtgccagATTTGGGATTGCAAGAACATCGTCTTGATGGTGATGAGTACCTTGCTGTTATTGATGAATTCATGGAGGCTGTGTTTACACGTTGGCCACATGTGATTGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g00500.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G406672_T02 (Zea mays), 3'ss of exon 6
tagattcatttgatttgctactgcta-attgatctgttttccaaaaatggaa-aagcaaaatcagaaacaagcaagataatctatttattattttgtgc-cagATTTGGGATTGCAAGAACATCGTCTTGATGGTGATGAGTACCTTGCTGTTATTGATGAATTCATGGAGGCTGTGTTTACACGTTGGCCACATGTGATTGT
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tatagtgat---acctgttcaaattagatacacttgatactcagcaatatatcaagaaaaattgtcatgttattccattttttcttgatttcttatcatacagATCTTGGGCTACAAGAGCACCGTCTTGAGGGAGATGAATATGTTTCAGTTATTGATGAATTCATGGAAGCTGTTTTTACTCGCTGGCCTAATGTTATTGT
upper sequence: Vv15s0021g00500.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA03G24630.1 (Glycine max), 3'ss of exon 6
--tagattcatttgatttgctactgctaattgatctgttttccaaaaatggaaaagcaaaatcagaaacaagcaagataatctatttattattttgtgccagATTTGGGATTGCAAGAACATCGTCTTGATGGTGATGAGTACCTTGCTGTTATTGATGAATTCATGGAGGCTGTGTTTACACGTTGGCCACATGTGATTGT
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tgttgttgcacttaaatatataatcagctttcatcttaatttctaaatgagctgagctgagttggctcaatgaaatatgattggtttttt--cttatatcagATTTGGGATTGCAGCAGCATCGTCTTGATGGGGATGATTATCTTGCTGTAGTTGATGAATTTATGGAGGCTGTCTTTACTCGCTGGCCAAATGTGATTGT
upper sequence: Vv15s0021g00500.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT2G13560.1 (Arabidopsis thaliana), 3'ss of exon 6
tagattcatttgattt-gctactgctaattgatctgttttccaaaaatggaaaagcaaaatcagaaacaagcaag-ataatctatttattat-tttgtgccagATTTGGGATTGCAAGAACATCGTCTTGATGGTGATGAGTACCTTGCTGTTATTGATGAATTCATGGAGGCTGTGTTTACACGTTGGCCACATGTGATTGT
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--gtctttcatggtttagggatttccaatagttcagagacatgaacg-agaatagcttattatctgtcatgtaatcgttctttctatgttttctttttgacagACTTGGGTCTGCAACAACGTCGTTTAGAGGATGACGACTATATAGATGTTATTGATGAATTTATGGAGGCAGTGTATACTCGGTGGCCACATGTTATTGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atggaaaagcaaaatcagaaacaagcaagataatctatttattattttgtgccagATTTGGGATTGCAAGAACATCGTCTTGATGGTGATGAGTACCTTGCTGTTATTGATGAATTCATGGAGGCTGTGTTTACACGTTGGCCACATGTGATTGT
ttatttt CT-rich tract
aagataatctatttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagattcatttgatttgctactgctaattgatctgttttccaaaaatggaaaagcaaaatcagaaacaagcaagataatctatttattattttgtgccagATTTGGGATTGCAAGAACATCGTCTTGATGGTGATGAGTACCTTGCTGTTATTGATGAATTCATGGAGGCTGTGTTTACACGTTGGCCACATGTGATTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - -ctactgc
- - - - - - - - - - - - - - - - - - - - caaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - aaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagataa