Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtcatctattccactaccaaacagatgttggcatctgaaatttatgtactcacatctgtatgattatttatgaacttctcgtcgtttttccagGTTCTTGGGTGAACTTCTATGGAAACATAGGAAAGCTCTTGATATCTCTG

Basic information

species Vitis vinifera
transcript Vv14s0219g00130.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0219g00130.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G23610.1 (Glycine max), 3'ss of exon 6
gtgtgtcatctattccactaccaaacagatgttggcatctgaaatttatgtactcacatctgtatgattatttatgaacttctcgtcgtttttccagGTTCTTGGGTGAACTTCTATGGAAACATAGGAAAGCTCTTGATATCTCTG
|| |||||||| ||    |||||||  | | ||    |   |  |||||    | |  |   ||  ||  |||   || | |   |    | ||||| ||| ||||||||||||||||||||||||||||| || ||| |||| |||
gtatgtcatctcttt---taccaaa-ggttcttcttgttcta--tttata-gttgaattgattaacatagttttcaaattccatctttgatgtccagATTCATGGGTGAACTTCTATGGAAACATAGGAAAACTATTGCTATCCCTG

upper sequence: Vv14s0219g00130.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G07750.2 (Glycine max), 3'ss of exon 7
gtgtgtcatctattccactaccaaacagatgttggcatctgaaatt-tatgtactcacatctgta-tgattatttatgaacttctcgtcgtttttccagGTTCTTGGGTGAACTTCTATGGAAACATAGGAAAGCTCTTGATATCTCTG
|| ||| |  ||    | ||  |   |||   || |||| ||  || |   |  |  || || || |||| | ||   |  |  |  || |   || |||||| ||||||||||||||||||||||| || ||  | || |||||  ||
gtttgtgaagta----attatgagttagaatctgccatcagattttatccttgatttcaactttaatgatgaatttcaacttaattatc-taaatctagGTTCCTGGGTGAACTTCTATGGAAACATTGGGAAAGTTTTTATATCCTTG

upper sequence: Vv14s0219g00130.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G07740.2 (Glycine max), 3'ss of exon 6
gtgtgtcatctattcca----ctaccaaacagatgttggcatctgaaatttatgtactcacatctgtatgattatttatgaacttctcgtcgtttttccagGTTCTTGGGTGAACTTCTATGGAAACATAGGAAAGCTCTTGATATCTCTG
|| ||| || | | | |     ||  ||  |||   || |||| ||   || | | ||   || ||||| |||| ||   |  || |     |   || |||||| ||||||||||||||||||||||| || ||  |  | |||||  ||
gtttgtgatttttacaagtaattatgaattagaccctgccatcaga---ttttatccttgaatgtgtataattaatttcaactttatt----taaatctagGTTCCTGGGTGAACTTCTATGGAAACATTGGGAAAGTGCTTATATCCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttatgtactcacatctgtatgattatttatgaacttctcgtcgtttttccagGTTCTTGGGTGAACTTCTATGGAAACATAGGAAAGCTCTTGATATCTCTG
        tactcac  putative branch site (score: 1)
                                    cttctcgtcgtttttc  putative PPT
                    tatgattatttatgaa  TA-rich tract