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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtcatttgttccactaccaaattgatactgccatctgaaatttatatactcacatgtgtatgaccatgtatgaactcaatgtcttcttccagATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTG

Basic information

species Vitis vinifera
transcript Vv14s0219g00120.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0219g00120.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G23610.1 (Glycine max), 3'ss of exon 6
gtgtgtcatttgttccactaccaaattgatactgccatctgaaatttatatactcacatgtgtatgaccatgtatgaactcaatgtcttct-tccagATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTG
|| |||||| | ||  || |  |  ||  |  ||   |     |||||||   | |  ||  ||  |   | |   || || || | |  | ||||||||| |||||||||||||||||||| |||||||| || ||||||||  ||
gtatgtcatctcttttaccaa-aggttcttcttgttct-----atttata-gttgaattgattaacatagttttcaaattccatctttgatgtccagATTCATGGGTGAACTTCTATGGAAACATAGGAAAACTATTGCTATCCCTG

upper sequence: Vv14s0219g00120.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G07110.1 (Glycine max), 3'ss of exon 6
gtgtgtcatttgttccactaccaaattgatactgccatctgaaatttatatactcacatgtgtatgaccatgtatgaactcaatgtcttcttccagATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTG
|| |||||| |  ||  ||      |||||||| ||   ||  ||||   ||   |  | |  ||   | | | | || ||      |  |||||||||| ||||| ||||||||||| |||||||||||  | ||||||||||||
gtttgtcatctcctcacctctgctgttgatacttcc---tgtcatttgattatatatttttacattcacttattttaaatcc---catctttccagATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTTTG

upper sequence: Vv14s0219g00120.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G23630.1 (Glycine max), 3'ss of exon 5
gtgtgtcatttgttccactaccaaattgatactgccatctgaaatttatatactcacatgtgtatgaccatgtatgaactcaatgtcttcttccagATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTG
|| |||||| |  ||  ||     ||   |  || ||| |||   ||||||| | |       || | | | | | || ||      |  |||||||||| ||||| ||||||||||| |||||||||||  | ||||||||| ||
gtttgtcatctcctcacctctgctatatttcttgtcatttga---ttatatattta-----acattaacttattttaaatcc---catctttccagATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTCTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110723575|gb|EE101045.1|EE101045
EST:     TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAG                         ATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTG
genomic: TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAGgtgtgtcatt ... cttcttccagATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTG
EST: gi|351045861|gb|FQ441046.1|FQ441046
EST:     TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAG                         ATTCTTGGGTGAAC
genomic: TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAGgtgtgtcatt ... cttcttccagATTCTTGGGTGAAC
EST: gi|110699274|gb|EE076127.1|EE076127
EST:     TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAG                         ATTTCT-GGGTGAACTTCTATGGNAATATAGGAAAAGCTCT-GCTATNCTT
genomic: TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAGgtgtgtcatt ... cttcttccagATT-CTTGGGTGAACTTCTATGGAAATATAGGAAA-GCTCTTGCTAT-CTT
EST: gi|110696243|gb|EE075180.1|EE075180
EST:     TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAG                         ATTCTTGGGTGAACTTCTAAGGAAATATAAGAAAGCTCTTGCTATCCTTG
genomic: TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAGgtgtgtcatt ... cttcttccagATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTG
EST: gi|110724366|gb|EE100141.1|EE100141
EST:     TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAG                         ATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTG
genomic: TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAGgtgtgtcatt ... cttcttccagATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTG
EST: gi|34549515|gb|CF517747.1|CF517747
EST:     TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACGATC                         ATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTC
genomic: TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAGgtgtgtcatt ... cttcttccagATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatttatatactcacatgtgtatgaccatgtatgaactcaatgtcttcttccagATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTG
         tactcac  putative branch site (score: 1)
                                          tgtcttcttcc  putative PPT
     tatatact  TA-rich tract