Sequence
atgc intronic sequence ATGC exonic sequence...ttctgccttcttgctatgttggtgaacttaagtttttttgcatggcctctctttagactacccttcattaaggtaactttaattctccgttttgttacagCTTTGTTTTGCAGCAAAAACCTGGTATGGAGGCTTTGTAGGGATGATGATTTTTGGTGCTAGTGAAGTAAGCAGAAATGTGGACCTTGGTGATGAGACGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0171g00280.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G06580.1 (Glycine max), 3'ss of exon 6
ttctgccttcttgctatgttggtgaacttaagtttttttgcatggcctctctttagactacccttcattaaggtaactttaattctccgttttgtta---cagCTTTGTTTTGCAGCAAAAACCTGGTATGGAGGCTTTGTAGGGATGATGATTTTTGGTGCTAGTGAAGTAAGCAGAAATGTGGACCTTGGTGATGAGACGA
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---aaaaactgaaaagcgaggactactgtagggatttatgcatctagttgcatagaatgaatttactaactcttccctttttctcccccctttaccggactagATGTGTTATGCTGCCAAAACTTGGCATGGTGGCTTCTTGGGCATGATGATTTTTGGTGCTAGTGAAGTGAGTAGAAATGTGGACTTAGGTGATGAGACTA
upper sequence: Vv14s0171g00280.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G24980.1 (Glycine max), 3'ss of exon 6
ttctgccttcttgctatgttggtgaacttaagtttttttgcatggcctctctttagactacccttcattaaggtaactttaattctccgttttgtta---cagCTTTGTTTTGCAGCAAAAACCTGGTATGGAGGCTTTGTAGGGATGATGATTTTTGGTGCTAGTGAAGTAAGCAGAAATGTGGACCTTGGTGATGAGACGA
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-aaaactaaaaagcaaggactacaa--taggggttatatgcatctagttgcatagaatgaatttactaattctttactttttctcccccctttaccggactagATGTGTTATGCTGCTAAAACTTGGCATGGTGGCTTCTTGGGCATGATGATATTTGGTGCAAGTGAAGTGAGTAGAAATGTGGACTTGGGTGATGAGACTA
upper sequence: Vv14s0171g00280.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G01780.1 (Arabidopsis thaliana), 3'ss of exon 6
ttctgccttcttgctatgttggtgaacttaagtttttttgcatggcctctctttagactacccttcattaaggtaactttaattctccgttttgttacagCTTTGTTTTGCAGCAAAAACCTGGTATGGAGGCTTTGTAGGGATGATGATTTTTGGTGCTAGTGAAGTAAGCAGAAATGTGGACCTTGGTGATGAGACGA
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---------------------gtgaacttggttctgttattcttcttgttccttaactggattgatggtctgataaacccctaacttgatgtcactacagCTTTGTTACGCTGCAAAAACGTGGCATGGAGGTTTTGTGGGTATGATGATCTTTGGCGCTAGTGAAGTGAGCAGGAACATGGATCTGGGTGACGAGACTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71881576|gb|DT030631.1|DT030631EST: CATTCCATAAAGTGTGCTCACACATCCTCCGTACTGTGGCTGGGTTTCAG CTTTGTTTTGCAGCAAAAACCTGGTATGGAGGCTTTGTAGGGATGATGATT
genomic: CATTCCATAAAGTGTGCTCACACATCCTCCGTACTGTGGCTGGGTTTCAGgtgggttcta ... tttgttacagCTTTGTTTTGCAGCAAAAACCTGGTATGGAGGCTTTGTAGGGATGATGATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cctctctttagactacccttcattaaggtaactttaattctccgttttgttacagCTTTGTTTTGCAGCAAAAACCTGGTATGGAGGCTTTGTAGGGATGATGATTTTTGGTGCTAGTGAAGTAAGCAGAAATGTGGACCTTGGTGATGAGACGA
ttctccgttttgtt CT-rich tract
taactttaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttctgccttcttgctatgttggtgaacttaagtttttttgcatggcctctctttagactacccttcattaaggtaactttaattctccgttttgttacagCTTTGTTTTGCAGCAAAAACCTGGTATGGAGGCTTTGTAGGGATGATGATTTTTGGTGCTAGTGAAGTAAGCAGAAATGTGGACCTTGGTGATGAGACGA
-tctgcct
- - - - -cttgcta
- - - - - - - - -gttggtg
- - - - - - - - - - - - - - - - - - - tgcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccttca