1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atttcttactcgtttattgggacaatttgtttagaatgagggcttatgaattgcaaactaacaagtgactctgaattgctcttttggtggttgtgtccagGTGCAAAGAAGAAGCAACTTCATGTTGATAAGCCGGATGACGACGTAGTTGTTAATGCTTATGATGATATCGATGACTATGATTTTATGTGAGGGCTCGG
species | Vitis vinifera |
transcript | Vv14s0128g00480.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGAGAAGCTGAAAGCGGAAAAGGAAGCCAATACTGGTAAAAAGAAAATTG GTGCAAAGAAGAAGCAACTTCATGTTGATAAGCCGGATGACGACGTAGTTGEST: gi|34548806|gb|CF517038.1|CF517038
genomic: TGAGAAGCTGAAAGCGGAAAAGGAAGCCAATACTGGTAAAAAGAAAATTGgtatgtatct ... ttgtgtccagGTGCAAAGAAGAAGCAACTTCATGTTGATAAGCCGGATGACGACGTAGTTG
EST: TGAGAAGCTGAGAGCGGAAAAGGAAGCCAATACTGGTAAAAAGAAAATTG GTGCAAAGAAGAAGCAACTTCATGTTGATAAGCCGGATGACGACGTAGTTGEST: gi|34548899|gb|CF517131.1|CF517131
genomic: TGAGAAGCTGAAAGCGGAAAAGGAAGCCAATACTGGTAAAAAGAAAATTGgtatgtatct ... ttgtgtccagGTGCAAAGAAGAAGCAACTTCATGTTGATAAGCCGGATGACGACGTAGTTG
EST: TGAGAAGCTGAGAGCGGAAAAGGAAGCCAATACTGGTAAAAAGAAAATTG GTGCAAAGAAGAAGCAACTTCATGTTGATAAGCCGGATGACGACGTAGTTGEST: gi|34319796|gb|CF372550.1|CF372550
genomic: TGAGAAGCTGAAAGCGGAAAAGGAAGCCAATACTGGTAAAAAGAAAATTGgtatgtatct ... ttgtgtccagGTGCAAAGAAGAAGCAACTTCATGTTGATAAGCCGGATGACGACGTAGTTG
EST: TGAGAAGCTGAAAGCGGAAAAGGAAGCCAATACTGGTAAAAAGAAAATTG GTGCAAAGAAGAAGCAACTTCATGTTGATAAGCCGGATGACGACGTAGTTGEST: gi|110686840|gb|EE063727.1|EE063727
genomic: TGAGAAGCTGAAAGCGGAAAAGGAAGCCAATACTGGTAAAAAGAAAATTGgtatgtatct ... ttgtgtccagGTGCAAAGAAGAAGCAACTTCATGTTGATAAGCCGGATGACGACGTAGTTG
EST: TGAGAAGCTGAAAGCGGAAAAGGAAGCCAATACTGGTAAAAAGAAAATTG GTGCAAAGAAGAAGCAACTTCATGTTGATAAGCCGGATGACGACGTAGTTG
genomic: TGAGAAGCTGAAAGCGGAAAAGGAAGCCAATACTGGTAAAAAGAAAATTGgtatgtatct ... ttgtgtccagGTGCAAAGAAGAAGCAACTTCATGTTGATAAGCCGGATGACGACGTAGTTG
atgaattgcaaactaacaagtgactctgaattgctcttttggtggttgtgtccagGTGCAAAGAAGAAGCAACTTCATGTTGATAAGCCGGATGACGACGTAGTTGTTAATGCTTATGATGATATCGATGACTATGATTTTATGTGAGGGCTCGG
aactaac putative branch site (score: 1)
aaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttcttactcgtttattgggacaatttgtttagaatgagggcttatgaattgcaaactaacaagtgactctgaattgctcttttggtggttgtgtccagGTGCAAAGAAGAAGCAACTTCATGTTGATAAGCCGGATGACGACGTAGTTGTTAATGCTTATGATGATATCGATGACTATGATTTTATGTGAGGGCTCGG
- - - - - - - - - - - - - - - - - - - - -gcttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctgaa