Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacactatctgctctgtgtttattcatttattcagttgacttaatttttgtgattacttttgctcaaaatctcgtctgattgagacattggttgccatagGCTACCATTTCAGGTGCCAAGTCCATGAAAGGCACCCCGTATTGGATGGCTCCGGAAGTCATTCTCCAGACAGGCCATAGCTT

Basic information

species Vitis vinifera
transcript Vv14s0128g00430.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0128g00430.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G064613_T03 (Zea mays), 3'ss of exon 6
gtacacactatctgctctgtgtttattcatttattcagttgacttaatttttgtgattacttttgctcaaaatctcgtctgattgagacattggttgcca-tagGCTACCATTTCAGGTGCCAAGTCCATGAAAGGCACCCCGTATTGGATGGCTCCGGAAGTCATTCTCCAGACAGGCCATAGCTT
| |  || |||   |  | |      ||  | || |      | ||  |  |||| ||  | |   |||| | | | | | |||      |||  | |   ||||| ||     | | ||||||| | |||||||| ||||| ||||||||||| || ||||||||| |    |  || || |  | 
gcattcattattgaccttttacca--tctgtcatccgtccatcatatatcatgtgctt-ttatccttcaataccac-tgtaattccatgcttgtcttctgctagGCAACTGCAACTGCTGCCAAGACGATGAAAGGTACCCCATATTGGATGGCACCAGAAGTCATTGTTGGAAGCGGTCACAATTG

upper sequence: Vv14s0128g00430.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA03G39760.1 (Glycine max), 3'ss of exon 6
gtacacactatctgctctgtgtttattcatttattcagttgacttaatttttgtgattactttt--gctcaaaatctcgtctgattgagacattgg----ttgccatagGCTACCATTTCAGGTGCCAAGTCCATGAAAGGCACCCCGTATTGGATGGCTCCGGAAGTCATTCTCCAGACAGGCCATAGCTT
|||  | |  |||  | |||   | | |  || |  |  |  ||| |  |||||||   || ||  | |   |   | || | |      | ||      ||    ||||| |||||||| ||||||||||||||||| || || || |||||||||||||| ||||| ||||||||||| || ||||||||
gtaatctcagtcttatatgtagctctactattgtgtatgtcgctttacctttgtgagggctcttctgtttgcacatttgtttaagcagtgccttttccttttaatctagGCAACCATTTCTGGTGCCAAGTCCATGAAGGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATAGCTT

upper sequence: Vv14s0128g00430.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G42340.1 (Glycine max), 3'ss of exon 6
gtacacactatctgctctgtgtttattcatttattcagttgacttaatttttgtgattacttt--tgctcaaaatctcgtctgattgagacattggttgccat-------------agGCTACCATTTCAGGTGCCAAGTCCATGAAAGGCACCCCGTATTGGATGGCTCCGGAAGTCATTCTCCAGACAGGCCATAGCTT
|||  | |  |||  ||| |   | | |   | |  |  |  ||| |  |||||||   ||||  || |   ||  | || | |        ||  ||    |             |||| |||||||| |||||||||||||||||||| || || |||||||||||||| ||||| ||||||||||| || ||| ||||
gtaatctcagtcttatctatagctctactactgtgtatgttgcttgacctttgtgagggcttttctgtttgcaaatttgtttaagcagtgtttttttttttttttataaataatccagGCAACCATTTCTGGTGCCAAGTCCATGAAAGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATTGCTT

upper sequence: Vv14s0128g00430.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G54960.1 (Arabidopsis thaliana), 3'ss of exon 6
----------------------------------gtacacactatctgctctgtgtttattcat-ttattcagttgacttaatttttgtgat-tacttttgctcaaaatctcgtctgattgagacattggttgcca-tagGCTACCATTTCAGGTGCCAAGTCCATGAAAGGCACCCCGTATTGGATGGCTCCGGAAGTCATTCTCCAGACAGGCCATAGCTT
                                  ||| |  |  ||||||||  ||||  |  | |||||||  |   | |     | | || ||||  |  |||  || |||  | ||  | || |  |||  |  |||||||| ||||| |||||||| || |||||||| || || |||||||||||||| ||||| ||||| || || || ||||||||
gtaagtcaatttttagtctccaacttctacttcagtaaaaccattctgctctcagttttctagtcttattcaagtttttca-----tataatatactccttatcatgatttcgattaat--atacttgagttttctctagGCTACTATTTCGGGTGCCAAATCTATGAAAGGAACTCCCTATTGGATGGCTCCAGAAGTTATTCTTCAAACCGGGCATAGCTT

upper sequence: Vv14s0128g00430.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G09000.1 (Arabidopsis thaliana), 3'ss of exon 6
-----------------------------------------gtacacactatctgctctgtgtttattcatttattcagttgacttaatttttgtgattacttttgctcaaaatctcgtctgattgagacattggttgccatagGCTACCATTTCAGGTGCCAAGTCCATGAAAGGCACCCCGTATTGGATGGCTCCGGAAGTCATTCTCCAGACAGGCCATAGCTT
                                         | |  || | | | || ||| ||   | |||| || |||||   || | |       ||   ||       || |  | |||||||     |     |  |||||||| ||  | ||||| || || |||||||| || || |||||||||||||||||||| ||||| || || || ||||||||
gtaagtcaaaaaataatttgttttctacaaagtatattgcaggaagcattctgttctgtgtattctcttatttctt-agttggtctagtata---acatatccttcagagtgatttaatgtgattgacttgatttcatctctagGCTACGATGACTGGTGCAAAATCTATGAAAGGGACACCATATTGGATGGCTCCGGAAGTTATTCTTCAAACTGGACATAGCTT

upper sequence: Vv14s0128g00430.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ32294 (Selaginella moellendorffii), 3'ss of exon 4
gtacacactatctgctctgtgtttattcatttattcagttgacttaatttttgtgattacttttgctcaaaatctcgtctgattgagacattggttgccatagGCTACCATTTCAGGTGCCAAGTCCATGAAAGGCACCCCGTATTGGATGGCTCCGGAAGTCATTCTCCAGACAGGCCATAGCTT
                                            ||    |||       ||||| |       |    ||||||   | ||  | | |  |||| |||||||| |  || |||||||||||||| |||||||| |||||||| || |||||  |    ||||| || || |  | 
-------------------------------------------gtaggcgttgaatgcctttttgatttggccatttcatgattg---cgtt--tcgacgcagGCAACCATTTCGGAAGCAAAGTCCATGAAAGGGACCCCGTACTGGATGGCCCCCGAAGTTGTCAGGCAGACTGGTCACAATTG

upper sequence: Vv14s0128g00430.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ20963 (Selaginella moellendorffii), 3'ss of exon 4
gtacacactatctgctctgtgtttattcatttattcagttgacttaatttttgtgattacttttgctcaaaatctcgtctgattgagacattggttgccatagGCTACCATTTCAGGTGCCAAGTCCATGAAAGGCACCCCGTATTGGATGGCTCCGGAAGTCATTCTCCAGACAGGCCATAGCTT
                                            ||    |||       ||||| |      ||    |||||   || ||  | | |  |||| |||||||| |  || |||||||||||||| |||||||| |||||||| || |||||  |    ||||| || || |  | 
-------------------------------------------gtaggcgttgaatacctttttgatttggccctttcatgatt---acgtt--tcgacgcagGCAACCATTTCGGAAGCAAAGTCCATGAAAGGGACCCCGTACTGGATGGCCCCCGAAGTTGTCAGGCAGACTGGTCACAATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtgattacttttgctcaaaatctcgtctgattgagacattggttgccatagGCTACCATTTCAGGTGCCAAGTCCATGAAAGGCACCCCGTATTGGATGGCTCCGGAAGTCATTCTCCAGACAGGCCATAGCTT
                            gtctgat  putative branch site (score: 4)
       attactttt  TA-rich tract