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gtttctttttgctgcttcaaatttttttccttggatctgtcctgtagaaaatgatctaataatgatcgaaaacaagttcttagttttttgcaaaaagttatggtattttgtgactgagattgttgaaggaattaataattagtgtaaacagGTCAAATGTTTCAATGCTCCATTGCAACCTTCTGAAATATCTGGTGTTAAGAGGGTTGTGCAAGAAAAATTGCATGAAGGAGTCAATGATCGTGGTCTTA
species | Vitis vinifera |
transcript | Vv14s0128g00400.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCATGACAGGGATGGTGCCCTGAGCGATGCAGAATTAAATGATTTTCAG GTCAAATGTTTCAATGCTCCATTGCAACCTTCTGAAATATCTGGTGTTAAGEST: gi|110690003|gb|EE066724.1|EE066724
genomic: ATCATGACAGGGATGGTGCCCTGAGCGATGCAGAATTAAATGATTTTCAGgtttcttttt ... gtgtaaacagGTCAAATGTTTCAATGCTCCATTGCAACCTTCTGAAATATCTGGTGTTAAG
EST: ATCATGACAGGGATGGTGCCCTGAGCGATGCAAAAT-AAATGATTT-CAA GTCAAA-GTTTTCA-TGCTC-ATTGCAACCTTCTGAA-TATC
genomic: ATCATGACAGGGATGGTGCCCTGAGCGATGCAGAATTAAATGATTTTCAGgtttcttttt ... gtgtaaacagGTCAAATGTTT-CAATGCTCCATTGCAACCTTCTGAAATATC
gttatggtattttgtgactgagattgttgaaggaattaataattagtgtaaacagGTCAAATGTTTCAATGCTCCATTGCAACCTTCTGAAATATCTGGTGTTAAGAGGGTTGTGCAAGAAAAATTGCATGAAGGAGTCAATGATCGTGGTCTTA
aattaat putative branch site (score: 3)
aattaataattagtgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttctttttgctgcttcaaatttttttccttggatctgtcctgtagaaaatgatctaataatgatcgaaaacaagttcttagttttttgcaaaaagttatggtattttgtgactgagattgttgaaggaattaataattagtgtaaacagGTCAAATGTTTCAATGCTCCATTGCAACCTTCTGAAATATCTGGTGTTAAGAGGGTTGTGCAAGAAAAATTGCATGAAGGAGTCAATGATCGTGGTCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG