1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaacccaacttgtgaaccctatttgtctcacggtatctacaaaagaatggtggttaatattacatgttttcccagATATGCTGGATATTCATCTTGTTTTCGTAAAGAGGCTGGATCGCATGGTCGGGATACTCTGGGAATATTCCGAGTTCACCAGTTTGAGAAAGTGGAGCAG
species | Vitis vinifera |
transcript | Vv14s0128g00370.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTGCTTATCATTTGGATGATTGGATACATCCTTCCCAGTTACCCTTAAG ATATGCTGGATATTCATCTTGTTTTCGTAAAGAGGCTGGATCGCACGGTCGEST: gi|29784787|gb|CB341220.2|CB341220
genomic: TGTGCTTATCATTTGGATGATTGGATACATCCTTCCCAGTTACCCTTAAGgtaaacccaa ... gttttcccagATATGCTGGATATTCATCTTGTTTTCGTAAAGAGGCTGGATCGCATGGTCG
EST: TGTGCTTATCATTTGGATGATTGGATACATCCTTCCCAGTTACCCTTAAG ATATGCTGGATATTCATCTTGTTTTCGTAAAGAGGCTGGATCGCACGGTCGEST: gi|110375281|gb|EC940255.1|EC940255
genomic: TGTGCTTATCATTTGGATGATTGGATACATCCTTCCCAGTTACCCTTAAGgtaaacccaa ... gttttcccagATATGCTGGATATTCATCTTGTTTTCGTAAAGAGGCTGGATCGCATGGTCG
EST: TGTGCTTATCATTTGGATGATTGGATACATCCTTCCCAGTTACCCTTAAG ATATGCTGGATATTCATCTTGTTTTCGTAAAGAGGCTGGATCGCACGGTCG
genomic: TGTGCTTATCATTTGGATGATTGGATACATCCTTCCCAGTTACCCTTAAGgtaaacccaa ... gttttcccagATATGCTGGATATTCATCTTGTTTTCGTAAAGAGGCTGGATCGCATGGTCG
atttgtctcacggtatctacaaaagaatggtggttaatattacatgttttcccagATATGCTGGATATTCATCTTGTTTTCGTAAAGAGGCTGGATCGCATGGTCGGGATACTCTGGGAATATTCCGAGTTCACCAGTTTGAGAAAGTGGAGCAG
tgttttccc CT-rich tract
ttaatattacatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacccaacttgtgaaccctatttgtctcacggtatctacaaaagaatggtggttaatattacatgttttcccagATATGCTGGATATTCATCTTGTTTTCGTAAAGAGGCTGGATCGCATGGTCGGGATACTCTGGGAATATTCCGAGTTCACCAGTTTGAGAAAGTGGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG