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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtcaaattgcattggtgaatgtagttggttaaaagagtagttttaatcagtccatagagtaccataatcttagcattaaacaagcagatttctgtgccagGTAATTGCAGGTTGCATTAGTGGTTCTGAAAAGTTGGTTTCAACTATTCGGAATTTGCATCATGTTCTGGGTGGTGTTCTCAACCCG

Basic information

species Vitis vinifera
transcript Vv14s0108g01110.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30131657|gb|CB916996.1|CB916996
EST:     CTGATCTCGTGCTGCATTCTGCAACAAAATATATTGCAGGACACAATGAT                         GTAATTGCAGGTTGCATTAGTGGTTCTGAAAAGTTGGTTTCAACTATTCGG
genomic: CTGATCTCGTGCTGCATTCTGCAACAAAATATATTGCAGGACACAATGATgtaggtcaaa ... tctgtgccagGTAATTGCAGGTTGCATTAGTGGTTCTGAAAAGTTGGTTTCAACTATTCGG
EST: gi|28969813|gb|CB348846.1|CB348846
EST:     CTGATCTCGTGCTGCATTCTGCAACAAAATATATTGCAGGACACAACGAT                         GTAATTGCAGGTTGCATTAGTGGTTCTGAAAAGTTGGTTTCAACTATTCGG
genomic: CTGATCTCGTGCTGCATTCTGCAACAAAATATATTGCAGGACACAATGATgtaggtcaaa ... tctgtgccagGTAATTGCAGGTTGCATTAGTGGTTCTGAAAAGTTGGTTTCAACTATTCGG
EST: gi|110731786|gb|EE106500.1|EE106500
EST:     CTGATCTCGTGCTGCATTCTGCAACAAAATATATTGCAGGACACAATGAT                         GTAATTGCAGGTTGCATTAGTGGTTCTGAAAAGTTGGTTTCAACTATTCGG
genomic: CTGATCTCGTGCTGCATTCTGCAACAAAATATATTGCAGGACACAATGATgtaggtcaaa ... tctgtgccagGTAATTGCAGGTTGCATTAGTGGTTCTGAAAAGTTGGTTTCAACTATTCGG
EST: gi|30128490|gb|CB913829.1|CB913829
EST:     CTGATCTCGTGCTGCATTCTGCAACAAAATATATTGCAGGACACAATGAT                         GTAATTGCAGGTTGCATTAGTGGTTCTGAAAAGTTGGTTTCAACTATTCGG
genomic: CTGATCTCGTGCTGCATTCTGCAACAAAATATATTGCAGGACACAATGATgtaggtcaaa ... tctgtgccagGTAATTGCAGGTTGCATTAGTGGTTCTGAAAAGTTGGTTTCAACTATTCGG
EST: gi|110702814|gb|EE079112.1|EE079112
EST:     CTGATCTCGTGCTGCATTCTGCAACAAAATATATTGCAGGACACAATGAT                         GTAATTGCAGGTTGCATTAGTAGTTCTGAAAAGTTGGTTTCAACTATTCGG
genomic: CTGATCTCGTGCTGCATTCTGCAACAAAATATATTGCAGGACACAATGATgtaggtcaaa ... tctgtgccagGTAATTGCAGGTTGCATTAGTGGTTCTGAAAAGTTGGTTTCAACTATTCGG
EST: gi|30133528|gb|CB918867.1|CB918867
EST:     CTGATCTCGTGCTGCATTCTGCAACAAAATATATTGCAGGACACAATGAT                         GTAATTGCAGGTTGCATTAGTGGTTCTGAAAAGTTGGTTTCAACTATTCGG
genomic: CTGATCTCGTGCTGCATTCTGCAACAAAATATATTGCAGGACACAATGATgtaggtcaaa ... tctgtgccagGTAATTGCAGGTTGCATTAGTGGTTCTGAAAAGTTGGTTTCAACTATTCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcagtccatagagtaccataatcttagcattaaacaagcagatttctgtgccagGTAATTGCAGGTTGCATTAGTGGTTCTGAAAAGTTGGTTTCAACTATTCGGAATTTGCATCATGTTCTGGGTGGTGTTCTCAACCCG
 ttttaat  putative branch site (score: 3)
                                           tttctgt  putative PPT
                  ataatctta  TA-rich tract