Sequence
atgc intronic sequence ATGC exonic sequence...attcatgttttcatttcactacaacttcgatgatcacactccttgcgaggtgcagctaggctcacatttgttctcattcatctggttttgatgcatacagGCAAGAAAAGAAAGGGAAGCCCGTGCTTCAGAAGGGGGATGGACTGTTGTTGTACATCATAAAGGGAGGAAAAAGACAACAGATTCTGAAAGTGGGATTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0083g00590.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os02g49620.1 (Oryza sativa), 3'ss of exon 6
--attcatgttttcatttca-ctacaacttcgatgatcacactccttgcgaggtgcagctaggctcacatttgttctcattcatctggttttgatgcatacagGCAAGAAAAGAAAGGGAAGCCCGTGCTTCAGAAGGGGGATGGACTGTTGTTGTACATCATAAAGGGAGGAAAAAGACAACAGATTCTGAAAGTGGGATTG
||| | | || || | || | | || | |||| | | || | ||||| | || || ||||| || |||| || ||||| |||||||| || ||| | || | |||||||| ||||| || |||||||| || ||||||||||| |||||| |||||| ||| | |
gacttcttctggatgttgggtcttcttctgaaaaaagtacttttgttgccaaaatgatctttagtt-tggttgttgcctgacacttg--cttgatttattcagGAGAGGAAAGAGAGGGAAGCACGCGCTGCTGAGGATGGATGGACAGTTGTGGTTCATCATAAGGGTAGGAAAAAGACCACAGATACTGAAACTGGAACAG
upper sequence: Vv14s0083g00590.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G32580.2 (Glycine max), 3'ss of exon 6
-------attcatgttttcatttcactacaacttcgatgatcacactccttgcgaggtgcagctaggctcacatttgttctcattcatctggttttgatgcatacagGCAAGAAAAGAAAGGGAAGCCCGTGCTTCAGAAGGGGGATGGACTGTTGTTGTACATCATAAAGGGAGGAAAAAGACAACAGATTCTGAAAGTGGGATTG
|| | ||| ||||| || | |||||| ||| || | | | | | | | | | ||| |||| || || |||| ||||||||||| ||||||| |||| |||||||||| ||||| |||||||| || ||||| || || || || || || |||||||| ||||| ||||
tttaaatgtttagccttttatttcgtaact-tatgaatgatcccacatattttatgtttttattttggttttacatataatgattt------tttttatcaatgcagGAAAGAAAAGAAAAAGAAGCCCTTGCTGCAGAAGGGGGGTGGACAGTTGTTGTGCACCATAAGGGTAGAAAGAAAACTACTGATTCTGAGAGTGGAATTG
upper sequence: Vv14s0083g00590.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G38720.1 (Arabidopsis thaliana), 3'ss of exon 6
attcatgttttcatttcactacaacttcga-tgatcacactccttgcgaggtgcagctaggctcacatttgttctcattcatctggttttgatgcatacagGCAAGAAAAGAAAGGGAAGCCCGTGCTTCAGAAGGGGGATGGACTGTTGTTGTACATCATAAAGGGAGGAAAAAGACAACAGATTCTGAAAGTGGGATTG
| || || | ||| | || | || ||| ||| | ||| || ||| | | | | | | | | | ||||| | | |||| | ||||| ||| ||||||| ||||||||||| || || ||||| ||||| ||||||||||||||||| ||||||| || | |
---gttcttctcgtcatcctatattttgaagtgttcatgtctattgtctaa-gtgacta---tcgtgtttttgtctaatgttgtcatgtgtgttga-acagGAGAAACAAGACAAAGAAGCTAAAGCTGCAGAAGGTGGATGGACTGTGGTCGTGCATCACAAAGGAAGGAAAAAGACAACAGAATCTGAAACCGGAACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgaggtgcagctaggctcacatttgttctcattcatctggttttgatgcatacagGCAAGAAAAGAAAGGGAAGCCCGTGCTTCAGAAGGGGGATGGACTGTTGTTGTACATCATAAAGGGAGGAAAAAGACAACAGATTCTGAAAGTGGGATTG
atttgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attcatgttttcatttcactacaacttcgatgatcacactccttgcgaggtgcagctaggctcacatttgttctcattcatctggttttgatgcatacagGCAAGAAAAGAAAGGGAAGCCCGTGCTTCAGAAGGGGGATGGACTGTTGTTGTACATCATAAAGGGAGGAAAAAGACAACAGATTCTGAAAGTGGGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- tcatgtt
- - - - - - - - - - -caacttc
- - - - - - - - - - - - - - - - - cacactc
- - - - - - - - - - - - - - - - - - - - - - - - - tgcagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctcaca