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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtggtctaaaagctcattaaattctccaataggcaccattattttgttttaggaacatttttattccttgggcagGGTGTTAAAATCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTA

Basic information

species Vitis vinifera
transcript Vv14s0083g00540.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349829177|gb|FQ419687.1|FQ419687
EST:     CTTTCCCATTCCATTTGGCTCTTCGAATTTGGGATGTCTTTCTTTATGAG                         GGTGTTAAAATCGTTTTCCAAGTTGGTCTGGCCCTACTGAAAATATTGCCA
genomic: CTTTCCCATTCCATTTGGCTCTTCGAATTTGGGATGTCTTTCTTTATGAGgttagtggtc ... ccttgggcagGGTGTTAAAATCGTTTTCCAAGTTGGTCTGGCCCTACTGAAA-TATTGCCA
EST: gi|351012823|gb|FQ430386.1|FQ430386
EST:     CTTTCCCATTCCATTTGGCTCTTCGAATTTGGGATGTCTTTCTTTATGAG                         GGTGTTAAAATCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCAT
genomic: CTTTCCCATTCCATTTGGCTCTTCGAATTTGGGATGTCTTTCTTTATGAGgttagtggtc ... ccttgggcagGGTGTTAAAATCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCAT
EST: gi|349827061|gb|FQ421334.1|FQ421334
EST:     CTTTCCCATTCCATTTGGCTCTTCGAATTTGGGATGTCTTTCTTTATGAG                         GGTGTTAAAATCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCAT
genomic: CTTTCCCATTCCATTTGGCTCTTCGAATTTGGGATGTCTTTCTTTATGAGgttagtggtc ... ccttgggcagGGTGTTAAAATCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCAT
EST: gi|349829128|gb|FQ419660.1|FQ419660
EST:     CTTTCCCATTCCATTTGGCTCTTCGAATTTGGGATGTCTTTCTTTATGAG                         GGTGTTAAAATCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCAT
genomic: CTTTCCCATTCCATTTGGCTCTTCGAATTTGGGATGTCTTTCTTTATGAGgttagtggtc ... ccttgggcagGGTGTTAAAATCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCAT
EST: gi|351038918|gb|FQ457593.1|FQ457593
EST:     CTTTCCCATTCCATTTGGCTCTTCGAATTTGGGATGTCTTTCTTTATGAG                         GGTGTTAAAATCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCAT
genomic: CTTTCCCATTCCATTTGGCTCTTCGAATTTGGGATGTCTTTCTTTATGAGgttagtggtc ... ccttgggcagGGTGTTAAAATCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCAT
EST: gi|110417184|gb|EC983219.1|EC983219
EST:     CTTTCCCATTCCATTTGGCTCTTCGAATTTGGGATGTCTTTCTTTATGAG                         GGTGTTAAAATCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCAT
genomic: CTTTCCCATTCCATTTGGCTCTTCGAATTTGGGATGTCTTTCTTTATGAGgttagtggtc ... ccttgggcagGGTGTTAAAATCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctccaataggcaccattattttgttttaggaacatttttattccttgggcagGGTGTTAAAATCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTA
                                   catttttattcctt  CT-rich tract
                 attattttgttttagg  TA-rich tract