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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattcacaggctaagtatcccaaaaaacccaagaaaccaagttctacattttctgtgcaccacatattttatgtcctctgaaattgatatcatttgctctgcatgacattcaaatttgggatggtcgaaatcctttcccttgcaatcattctagttcagtttcagtacctgaaaatcttccatgacagGGGATGGTGGGGCATCTACAAGTGTTTGTCCTCTCAGACTGGTTCTCAGTTGGTCTGCCAATTGAATATTCTGAGACAACAAAAGGTCTTAGGTGGCTTA

Basic information

species Vitis vinifera
transcript Vv14s0068g02010.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g02010.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G06080.1 (Glycine max), 3'ss of exon 10
gtaagattcacaggctaagtatcccaaaaaacccaagaaaccaagttctacattttctgtgcaccacatattttatgtcctctgaaattgatatcatttgctctgcatgacattcaa-atttgggatggtcgaaatcctttcccttgcaatcattctagttcagtttca-gtacctgaaaatcttccatg----acagGGGATGGTGGGGCATCTACAAGTGTTTGTCCTCTCAGACTGGTTCTCAGTTGGTCTGCCAATTGAATATTCTGAGACAACAAAAGGTCTTAGGTGGCTTA
                                                          ||     |   |  | ||||    ||  |||      |  |    | ||  ||||| || ||||   |   ||  | | ||| |      ||||  |||| || ||  | | ||     || || |  ||      |||||| ||| | || || |||||||| |||| |||| ||   ||||| |||  |  ||     ||  |||| ||||||||||||| ||||||||||||||| |
----------------------------------------------------------gtaagtaaagaaactaatgta---tggtatta----taactagaataca-aacatttaacattttttaatttctgagttcttccatgcataatc--tctatttaagggttatgttgtaaaacatttgacacattttacagGGAATGATTGGACACCTACAAGTCTTTGCCCTCACAAGTTGGTTTTCAACTAATCAATTTATCAAATACTCTGAGACAACAAGAGGTCTTAGGTGGCTAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcccttgcaatcattctagttcagtttcagtacctgaaaatcttccatgacagGGGATGGTGGGGCATCTACAAGTGTTTGTCCTCTCAGACTGGTTCTCAGTTGGTCTGCCAATTGAATATTCTGAGACAACAAAAGGTCTTAGGTGGCTTA
                                          tcttccat  CT-rich tract
                                      aaaatctt  TA-rich tract