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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattcacaggctaagtatcccaaaaaacccaagaaaccaagttctacattttctgtgcaccacatattttatgtcctctgaaattgatatcatttgctctgcatgacattcaaatttgggatggtcgaaatcctttcccttgcaatcattctagttcagtttcagtacctgaaaatcttccatgacagGGGATGGTGGGGCATCTACAAGTGTTTGTCCTCTCAGACTGGTTCTCAGTTGGTCTGCCAATTGAATATTCTGAGACAACAAAAGGTCTTAGGTGGCTTA

Basic information

species Vitis vinifera
transcript Vv14s0068g02010.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g02010.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G06080.1 (Glycine max), 3'ss of exon 10
gtaagattcacaggctaagtatcccaaaaaacccaagaaaccaagttctacattttctgtgcaccacatattttatgtcctctgaaattgatatcatttgctctgcatgacattcaa-atttgggatggtcgaaatcctttcccttgcaatcattctagttcagtttca-gtacctgaaaatcttccatg----acagGGGATGGTGGGGCATCTACAAGTGTTTGTCCTCTCAGACTGGTTCTCAGTTGGTCTGCCAATTGAATATTCTGAGACAACAAAAGGTCTTAGGTGGCTTA
|| | | | |||| || ||| | | | || ||||| || |||| | || | | ||| | |||| |||| || || | | || || || | || |||||| ||| | || || |||||||| |||| |||| || ||||| ||| | || || |||| ||||||||||||| ||||||||||||||| |
----------------------------------------------------------gtaagtaaagaaactaatgta---tggtatta----taactagaataca-aacatttaacattttttaatttctgagttcttccatgcataatc--tctatttaagggttatgttgtaaaacatttgacacattttacagGGAATGATTGGACACCTACAAGTCTTTGCCCTCACAAGTTGGTTTTCAACTAATCAATTTATCAAATACTCTGAGACAACAAGAGGTCTTAGGTGGCTAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcccttgcaatcattctagttcagtttcagtacctgaaaatcttccatgacagGGGATGGTGGGGCATCTACAAGTGTTTGTCCTCTCAGACTGGTTCTCAGTTGGTCTGCCAATTGAATATTCTGAGACAACAAAAGGTCTTAGGTGGCTTA
                                          tcttccat  CT-rich tract
 aaaatctt  TA-rich tract