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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaactattttttctggctatatattctaacttaagcgaattatggtcctgaagatatcatctgcagtaggttggtaactggctcgtgtgatgtcataccttttaaatttctggagtatttgaatacattgtttgactttttgttcattgtaatcttcctgattaattgagctaacctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATACACTGTAACCCTGTTTCACCGTGTTGCTGACAATTTTAGAACAAATGCAC

Basic information

species Vitis vinifera
transcript Vv14s0068g01280.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g01280.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G128995_T02 (Zea mays), 3'ss of exon 4
gtaagaactattttttctggctatatattctaacttaagcgaattatggtcctgaagatatcatctgcagtaggttggtaactggctcgtgtgatgtcataccttttaaatttctggagtatttgaatacat-tgtttgactttttgttcattgtaatcttcctgattaattgagctaacctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATACACTGTAACCCTGTTTCACCGTGTTGCTGACAATTTTAGAACAAATGCAC
                                                                                        ||   | ||  |     |||  |  |||   |  ||| |||  | | ||          || | ||    | | |  || |  | |   ||  | ||  |||| || |||||||| || |||||  ||||||||||||| |||||||| ||||||||||| ||||||      |||| |||||||||||       ||| |
----------------------------------------------------------------------------------------gt-caacgttgtctaaattatgtccctgacttccttgtatagttatattcataccggatttgactgcccccattcatatgagctaactgaaaattttatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAATGAATATGCTCTCTACACTGTAACACTGTTTGCTAAGGTTGTTGACAATTTTAAGGTCCGTGCTC

upper sequence: Vv14s0068g01280.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G27360.1 (Glycine max), 3'ss of exon 6
gtaagaactattttttctggctatatattctaacttaagcgaattatggtcctgaagatatcatctgcagtaggttggtaactggctcgtgtgatgtcataccttttaaatttctggagtatt-tgaatacattgtttgactttttgttcattgtaatcttcctgattaattgagctaacctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATACACTGTAACCCTGTTTCACCGTGTTGCTGACAATTTTAGAACAAATGCAC
                                                                                      |  |   |||  ||   ||| | | |  || |  ||| |||  |   |||||    |    ||  |  | ||  |  |  ||| | |    ||  | ||| ||||||||||||| || |||||| || |||| || ||||| |||||||| || |||||||| || ||    |||||||| || ||||||||||| | |||||
-------------------------------------------------------------------------------------atattccaatg--atgtttttgacactattgaataattatgagcatgctgttttttctagctttattccttattctgattcttattaggataaa--tgttttagGTCCCCAGGTCTTCTAAGAAGTTGTATGAGGATAATGAATATGCTCTTTATACTGTAACACTCTTCAGTCGTGTTGCGGATAATTTTAGAACTAGTGCAC

upper sequence: Vv14s0068g01280.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G26220.1 (Glycine max), 3'ss of exon 6
gtaagaactattttttctggctatatattctaacttaagcgaattatggtcctgaagatatcatctgcagtaggttggtaactggctcgtgtgatgtcataccttttaaatttctggagtatttgaatacattgtttgactttttgttcattgtaatcttcctgattaattgagctaacctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATACACTGTAACCCTGTTTCACCGTGTTGCTGACAATTTTAGAACAAATGCAC
                                                                                         ||| || | |||  |  || |    ||   ||| | | |  | | |||    ||||  |   | || | ||  |   | |||    |||  | ||| |||| |||||||| ||||||||| || |||| || || || |||||||| || |||||||| || ||    |||||||| |||||||||||||| | |||||
-----------------------------------------------------------------------------------aatctttgtaat-ttataaatagtacaaccatgt--tatctaacttaaatatttctgattttccttgatttattttttatt-ctgattacaataag-tattttagGTTCCCAGGTCTTCCAAGAAGTTGTATGAGGATAACGAATATGCTCTTTATACTGTAACACTCTTCAGTCGTGTTGCAGACAATTTTAGAACTAGTGCAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351031454|gb|FQ446657.1|FQ446657
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|349830231|gb|FQ420491.1|FQ420491
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|349827680|gb|FQ422548.1|FQ422548
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|351024893|gb|FQ433310.1|FQ433310
EST:     ATTCCCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|110699022|gb|EE077184.1|EE077184
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|110693329|gb|EE069475.1|EE069475
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCATGAAGACNATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|349833078|gb|FQ416456.1|FQ416456
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCCAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|110688297|gb|EE066689.1|EE066689
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|351022393|gb|FQ445168.1|FQ445168
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|161716182|gb|FC069494.1|FC069494
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCAT
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCAT
EST: gi|351013608|gb|FQ429749.1|FQ429749
EST:     ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|71887796|gb|DT036851.1|DT036851
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|110693330|gb|EE069469.1|EE069469
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTAATGAA-CATTGACTAGCTATGTG                         GTCTCCAGGTCATCCAAGAA-CTTG-ATGAAGACA-TGAGTATG-TCCATA
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCT-GCATGAAGACAATGAGTATGCTCTATA
EST: gi|110700866|gb|EE077894.1|EE077894
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GACCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|349830278|gb|FQ420538.1|FQ420538
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCATGAAGACNATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgactttttgttcattgtaatcttcctgattaattgagctaacctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATACACTGTAACCCTGTTTCACCGTGTTGCTGACAATTTTAGAACAAATGCAC
                                       agctaac  putative branch site (score: 2)
                                             cctctttc  CT-rich tract
                             tgattaatt  TA-rich tract