Sequence
atgc intronic sequence ATGC exonic sequence...ttaagagtatgttcttgtagtgtgtactttcttctttttgggaggtaatagccaagtaatccatggaattacttatttgtctttattgaaaactctgtagAAATACGCCAAGTATGTTGGACTGAAGAGGGATTTCCGACTTGTAGTAAGGGGTGCTGCCCGTAACATGGTTACCATTCTCAATGGATCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01150.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G05340.1 (Glycine max), 3'ss of exon 6
ttaagag---tatgttcttgtagtgtgtactttcttctttttgggaggtaatagccaagtaatccatggaattacttatttgtctttattgaaaactctgtagAAATACGCCAAGTATGTTGGACTGAAGAGGGATTTCCGACTTGTAGTAAGGGGTGCTGCCCGTAACATGGTTACCATTCTCAATGGATCTG
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taaagtgatataggatgttagagcatatagtgcatttatct---gatgtgatattaaaagaaaatttgcatatacttattttgcttctttatggattgtgtagAAATATGCCAAATATGTTGGTCTTAAGAGGGATTTCCGTCTAGTAGTAAGAGGTGCTGCTCGTAACATGGTCCCCATTCTAAACGGGTCTG
upper sequence: Vv14s0068g01150.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G27570.2 (Glycine max), 3'ss of exon 6
ttaagagtatgttcttgtagtgtgtacttt-cttctttttgggaggtaatagccaagtaatccatggaattacttatttgtctttattgaaaactctgtagAAATACGCCAAGTATGTTGGACTGAAGAGGGATTTCCGACTTGTAGTAAGGGGTGCTGCCCGTAACATGGTTACCATTCTCAATGGATCTG
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-aagtgatatagagtattagagcatatagtgcatttatctgtgatatgatatcaaaagaaaatttgcatatacttattttgtctctttatggattgtgtagAAATATGCCAAATATGTTGGTCTTAAGAGGGATTTCCGTCTTGTTGTAAGAGGTGCTGCTCGTAACATGGTCCCTATTCTAAACGGGTCTG
upper sequence: Vv14s0068g01150.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G08660.1 (Arabidopsis thaliana), 3'ss of exon 6
------------ttaagagtatgttcttgtagtgtgtactttcttctttttg-ggaggtaatagccaag---taatccatggaattac--ttatttgtctttattgaaaact---ctgtagAAATACGCCAAGTATGTTGGACTGAAGAGGGATTTCCGACTTGTAGTAAGGGGTGCTGCCCGTAACATGGTTACCATTCTCAATGGATCTG
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gtaataatatgtctaacactctgatttctttgagtttaccgacacttcgacatggtcttgattcttgaattttgatttttgttgctggcattgcttatattcatgttgaactatgttgcagAAGTATGCCAAGTACGTAGGAGTGAAAAGGGATTTCCGACTAGTTGTTCGTGGTGCAGCTCGTAACATGATTAAGATTCTCAATGGGTCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatagccaagtaatccatggaattacttatttgtctttattgaaaactctgtagAAATACGCCAAGTATGTTGGACTGAAGAGGGATTTCCGACTTGTAGTAAGGGGTGCTGCCCGTAACATGGTTACCATTCTCAATGGATCTG
aattacttatttgtct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttaagagtatgttcttgtagtgtgtactttcttctttttgggaggtaatagccaagtaatccatggaattacttatttgtctttattgaaaactctgtagAAATACGCCAAGTATGTTGGACTGAAGAGGGATTTCCGACTTGTAGTAAGGGGTGCTGCCCGTAACATGGTTACCATTCTCAATGGATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - -ttttggg
- - - - - - - - - - - - - - - - - - - - - - - - - -ccaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgga