Sequence
atgc intronic sequence ATGC exonic sequence...ctatgtatataatatttggggctctggaagaatccccaaaattctgttgatgagttttgtttgagactgttactaatgaattggctttaatatatttcagATTAGCAAGAAACAGCATCAACTTGTTAAGAGTATGAAACAGTCTGGTAATAGCATTCAACCTAGGTCGCTTAACCGTGTTCTAGGTGACCTTGATAGTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01010.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G07360.1 (Glycine max), 3'ss of exon 6
--ctatgtatataatatttgggg-ctctggaagaatccccaaaattctgttgatgagttttgtttgagactgttactaatgaattggctttaatatatttcagATTAGCAAGAAACAGCATCAACTTGTTAAGAGTATGAAACAGTCTGGTAATAGCATTCAACCTAGGTCGCTTAACCGTGTTCTAGGTGACCTTGATAGTT
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attttttcctttaaggtgaagaaacccagcaaaaattttcatctttgccatgaata-tttgagttagggcatttgctaattgttt--cctttatgcatttcagATTAGCAAGCAGCAGCATGAACTTGTTAAGAATATGAAGCAGGCTGGTAAAAGCATCCAATCTAGGTCCCTTAACCGTGTTTTGGGTAACCTTGAAAAAA
upper sequence: Vv14s0068g01010.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G26350.1 (Glycine max), 3'ss of exon 7
---ctatgtatataatatttggggctctggaagaatccccaaaattctgttgatgagttttgtttgagactgttactaatgaattggctttaatatatttcagATTAGCAAGAAACAGCATCAACTTGTTAAGAGTATGAAACAGTCTGGTAATAGCATTCAACCTAGGTCGCTTAACCGTGTTCTAGGTGACCTTGATAGTT
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ttcctttatggtgaggaaacccagctaaaaattcatctttaccatgaatatgtttaattttgttagggcatttt-ctaattgttt--cctttatgcgtttcagATTAGTAGGCAGCAGCATGAGCTTGTTAAGAATATGAAGCAGTCTGGTAAAAGCATCCAATCTAGGTCCCTTAACCGGGTTTTGGGTAACCTTGAAAAAA
upper sequence: Vv14s0068g01010.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G13950.1 (Arabidopsis thaliana), 3'ss of exon 8
--ctatg-tatataatatttggggctctggaagaatccccaaaattctgttgatgagttttgtttgagactgttactaatgaattggctttaatatatttcagATTAGCAAGAAACAGCATCAACTTGTTAAGAGTATGAAACAGTCTGGTAATAGCATTCAACCTAGGTCGCTTAACCGTGTTCTAGGTGACCTTGATAGTT
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tgctatcctctgtggcttttgttgtgttgaatgtgcagttgccgttcatgtaattgatgtgcctattgatcaagctt--ttaattgcattttatatatt-cagATAAGCAAGAAGCAGCATCAAATTGTCACAAGCATGAAGCAGTCTGGTAAAAGCATTCAGTCGAGAGCACTTAATCGAATCTTCGGTAACATCGATAGTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttgatgagttttgtttgagactgttactaatgaattggctttaatatatttcagATTAGCAAGAAACAGCATCAACTTGTTAAGAGTATGAAACAGTCTGGTAATAGCATTCAACCTAGGTCGCTTAACCGTGTTCTAGGTGACCTTGATAGTT
tttaatatatttca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctatgtatataatatttggggctctggaagaatccccaaaattctgttgatgagttttgtttgagactgttactaatgaattggctttaatatatttcagATTAGCAAGAAACAGCATCAACTTGTTAAGAGTATGAAACAGTCTGGTAATAGCATTCAACCTAGGTCGCTTAACCGTGTTCTAGGTGACCTTGATAGTT
ctatgta
- - - - - - - - - - - - -ggaagaa
- - - - - - - - - - - - - - - - tccccaa
- - - - - - - - - - - - - - - - - - - - - -ctgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggcttt