1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cttgtcattgcaatctattcataattgtctcctggtgtgggcatgtttgtactctcaacattttcttattatgcattctgatttcaccatttgaatgcagAGGGCTTCTCGTGGTTGGTGTGAGAAAATGATTGATGTTGCTGAAGATTCATC
species | Vitis vinifera |
transcript | Vv14s0066g02600.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCATTATTGCCCATGAGTTTTATGATGCTCTACCAGTTCATCAATTTCAG AGGGCTTCTCGTGGTTGGTGTGAGAAAATGATTGATGTTGCTGAAGAT-CAEST: gi|30255534|gb|CB971666.1|CB971666
genomic: TCATTATTGCCCATGAGTTTTATGATGCTCTACCAGTTCATCAATTTCAGgttcgtttga ... ttgaatgcagAGGGCTTCTCGTGGTTGGTGTGAGAAAATGATTGATGTTGCTGAAGATTCA
EST: TCATTATTGCCCATGAGTTTTATGATGCTCTACCAGTTCATCAATTTCAG AGGGCTTCTCGTGGTTGGTGTGAGAAAATGATTGATGTTGCTGAAGATTCA
genomic: TCATTATTGCCCATGAGTTTTATGATGCTCTACCAGTTCATCAATTTCAGgttcgtttga ... ttgaatgcagAGGGCTTCTCGTGGTTGGTGTGAGAAAATGATTGATGTTGCTGAAGATTCA
tttgtactctcaacattttcttattatgcattctgatttcaccatttgaatgcagAGGGCTTCTCGTGGTTGGTGTGAGAAAATGATTGATGTTGCTGAAGATTCATC
ttctgat putative branch site (score: 3)
aacattttcttattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgtcattgcaatctattcataattgtctcctggtgtgggcatgtttgtactctcaacattttcttattatgcattctgatttcaccatttgaatgcagAGGGCTTCTCGTGGTTGGTGTGAGAAAATGATTGATGTTGCTGAAGATTCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - -cattgca
- - - - - - - ctattca
- - - - - - - - - - - - -tgtctcc
- - - - - - - - - - - - - - - - -ggtgtgg
- - - - - - - - - - - - - - - - - - - - gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - -ctctcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcacca