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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaccggccggccctttaattaggatacacatatatatgtatatttgtatatttagatgctcttattaatttgatgaattcaatcttccaaatgttttagAAGGAAAATGGACATTTGAGCGATGAGGAACTGTACCGTCATGCAAGGCTGGTGACTTCTGCTGTAATTGCAAAAGTTCTTACCATTGATTGGACCGTGG

Basic information

species Vitis vinifera
transcript Vv14s0066g01690.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01690.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G01470.1 (Glycine max), 3'ss of exon 5
--gtacaccggccggccctttaattaggatacacatatatatgtatatttg-tatat-ttagatgctcttattaatttgatgaattcaatcttccaaatgttttagAAGGAAAATGGACATTTGAGCGATGAGGAACTGTACCGTCATGCAAGGCTGGTGACTTCTGCTGTAATTGCAAAAGTTCTTACCATTGATTGGACCGTGG
   ||                |||||  ||| | | | | ||||| |     |||||  ||  |      ||  || |    | || |||   |  |    || ||||  |  ||   || ||| | ||||| ||||| || || ||||| ||  ||||||| || ||||| |||||||| |||| ||||||||||||||| || |
acatatcaaaattaatgtcacaattactatatataaacagatgtaaagaaaatatatactaactatgtacatccatct--ctattttaatgcactca----ttcagAAACATTATCCTCAATTGGGAGATGAAGAACTTTATCGCCATGCCAGATTGGTGACCTCAGCTGTGATTGCAAAGGTTCATACCATTGATTGGACTGTAG

upper sequence: Vv14s0066g01690.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G01480.1 (Glycine max), 3'ss of exon 5
gtacaccggccggccctttaattaggatacacatatatatgtatatttgtatatttag---atgctcttattaatttgatgaattcaatcttccaaatgttt-------tagAAGGAAAATGGACATTTGAGCGATGAGGAACTGTACCGTCATGCAAGGCTGGTGACTTCTGCTGTAATTGCAAAAGTTCTTACCATTGATTGGACCGTGG
                |  |||||    | |    | | | |||||||  | | | ||   | |    || ||| |  ||| | | |   |    ||  |||        |||   |  ||   || |||   ||||| ||| | || |||||||||||  ||||||| || ||||| |||||||| |||| ||| || ||||||||||| |
------------taaataaaattatataatattattttttctatattttaaaaataaggaaaaggaaatactaactatatgcaattatcttcgtgaaaatttgctccttcagAGTAATTATCCTCACTTGGAAGATGAAGAAGTTTATCGTCATGCAAGATTGGTGACCTCAGCTGTGATTGCAAAGGTTCATACTATCGATTGGACCGTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatatttagatgctcttattaatttgatgaattcaatcttccaaatgttttagAAGGAAAATGGACATTTGAGCGATGAGGAACTGTACCGTCATGCAAGGCTGGTGACTTCTGCTGTAATTGCAAAAGTTCTTACCATTGATTGGACCGTGG
                 ttattaatttgatgaa  TA-rich tract