Sequence
atgc intronic sequence ATGC exonic sequence...aaaacttgagagctaagagctaaaacacaagatgcatatcatgtagctgttttcagtttcagtagaagagatttgaggatctgggttgtttaattttcagGTATGGACTGCTGGGAAAGAAATTCAAGGACACATTTGGGCATGTTGGGGGAACCATCTTGGGAGGGCTTGTGGGCCAAAAGAAACCCAACAACCATGGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G01470.1 (Glycine max), 3'ss of exon 6
aaaacttgagagctaagagctaaaacac-aagatgcatatcatgtagctgttttcagtttcagtagaagagatttg---aggatctgggttgtttaattttcagGTATGGACTGCTGGGAAAGAAATTCAAGGACACATTTGGGCATGTTGGGGGAACCATCTTGGGAGGGCTTGTGGGCCAAAAGAAACCCAACAACCATGGG
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-aaacttaagtattattttgacaaacattaagataatgaaaataacatataatttatttctaaaaaaaattgttagtctaacatatagtttgttt---tttcagGTATGGATTATTAGGGAAGAAATTTAAGGATACATTTGGGCATGTTGGTGGAGTCATCTTGGGAGGATTAGTGGGTCTTAAGAGACCAGAAAATCATGGT
upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G01480.1 (Glycine max), 3'ss of exon 6
aaaacttgagagctaa--gagctaaaacacaagatgcatatcatgtagctgttttcagtttcagtagaagagatttgaggatctgggttgttt-aattttcagGTATGGACTGCTGGGAAAGAAATTCAAGGACACATTTGGGCATGTTGGGGGAACCATCTTGGGAGGGCTTGTGGGCCAAAAGAAACCCAACAACCATGGG
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-aaacttttaagatgattaaaatgaagcatgatttatttctgaaaaagttaagtccaatat--atactttggatttgattttttaattttttttaattttcagGTATGGATTATTGGGGAAGACATTTAAGGATACATTTGGGCATGTTGGTGGAGCCGCCTTGGGTGGACTAGTGGGTCTTAAGAGACCAGAAAATCATGGT
upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G04410.1 (Glycine max), 3'ss of exon 6
-aaaacttgagagctaaga-gctaaaacacaagatgc-----atatcatgtagctgttttcagtttcagtagaagagatttgaggatctgggttgtttaattttcagGTATGGACTGCTGGGAAAGAAATTCAAGGACACATTTGGGCATGTTGGGGGAACCATCTTGGGAGGGCTTGTGGGCCAAAAGAAACCCAACAACCATGGG
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gcaaattaatgtattactttgacaaaaattaagataatgaaaatagcatataatttatttctattttttttttg-----tctaacatatagttttttt--ttttcagGTATGGATTATTGGGGAAGCCATTTAAGGATACATTTGGGCATGTTGGTGGAGTCATCTTGGGAGGATTAGTGGGTCTTAAGAGACCAGAAAATCACGGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161706450|gb|FC055497.1|FC055497EST: GTGGAGCTTCTCAAAACCGATACACTACTTGCAGGAATGCGCGCCAATTG GTATGGACTGCTGGGAAAGAAATTCAAGG
genomic: GTGGAGCTTCTCAAAACCGATACACTACTTGCAGGAATGCGCGCCAATTGgtaaatatta ... taattttcagGTATGGACTGCTGGGAAAGAAATTCAAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gctgttttcagtttcagtagaagagatttgaggatctgggttgtttaattttcagGTATGGACTGCTGGGAAAGAAATTCAAGGACACATTTGGGCATGTTGGGGGAACCATCTTGGGAGGGCTTGTGGGCCAAAAGAAACCCAACAACCATGGG
gtttaat putative branch site (score: 4)
ttttc CT-rich tract
ttgtttaattttca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaacttgagagctaagagctaaaacacaagatgcatatcatgtagctgttttcagtttcagtagaagagatttgaggatctgggttgtttaattttcagGTATGGACTGCTGGGAAAGAAATTCAAGGACACATTTGGGCATGTTGGGGGAACCATCTTGGGAGGGCTTGTGGGCCAAAAGAAACCCAACAACCATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
aaaactt
- - - - - - - - - -ctaaaac
- - - - - - - - - - - - - - - gatgcat
- - - - - - - - - - - - - - - - - - - tcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggttgt