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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaccattattggtttagcactacatctttcatgatatttttatcaaaatggatttggattgaaattatcaaggtgaactcatgagcagcctccttgactatagacttttctgccttttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG

Basic information

species Vitis vinifera
transcript Vv14s0060g02260.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os02g56000.1 (Oryza sativa), 3'ss of exon 6
gtaaaccattattggtttagcactacatctttcatgatatttttatcaaaatggatttggattgaaattatcaaggtgaactcatgagcagcctccttgactatagacttttctgccttttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG
                       ||||| |  |||  | | ||||||||  || ||     | || || || |        |  |   |||  |  |  ||| ||   |||||       |  | ||||||||| ||||| || || || |||||||| ||||||||||||||  |||||||||| ||||| || || ||||| ||  | ||||||
----------------------gtacatttagcat--tgtctttatcaa--tgcatgcaactagacat-atta--------ttgttcacagtataataaactgtaattttttcc------tgctacagTGAAGTTAGTGGTGACAGAGAAGTGCAGCGCACAATGTTGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 6
--------------------------------------------------------------------------gtaaaccattattg---gtttagcactacatctttcatgatatttttatcaaaatggatttggattgaaattatcaaggtgaa-ctcatgagcagcctccttgactatagacttttctgccttttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG------------
                                                                          | |||   | || |    |  || |  | | |  |  |  | |||  ||  |  || |     ||     |||| | |  ||| || ||  |  || | ||   | |||   || |    || ||  | ||||||||| || || ||||| || || ||||||||||||||||| ||||||||||| || ||||| || ||||| |||||  | ||||||            
gtatgttttgtatgacattttcagttcatgcatgattttattcctgttttggctgatgatactctttataggatgaaaatgttaatcgcctatacaggatcagagcactttttttgtttcaatttag-tgtaaacaaatcattcttattaggaagaagcttatctgatgcatgct---ccataattttgtt---ctcttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAATCAACTGGATGGATTCAGCAGCGATGAGAGAATAAAGGTCATAGCTGCA

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G027282_T01 (Zea mays), 3'ss of exon 6
gtaaaccattattggtttagcactacatctttcatgatatttttatcaaaatggatttggattgaaatta-tcaaggtgaactcatgagcagcctccttgactatagacttttctgccttttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG
                         |||      || | |  ||  | || |   ||  ||    ||||  |    ||||   || |||       | | |   |   ||||  | | ||||| | ||||||||| ||||| ||||| || |||||  ||||||||||||| ||  |||| ||||||||||| |||||||| |||||  | ||||||
-------------------------catacgatgtgttctcctttactaattaacttgtgagcacaattgctttttgtgagtgcaagagt----ctcctaatatttttctttgtttcattttactacagTGAAGTTAGTGGTGATAGAGAAGTGCAAAGGACAATGTTGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G173849_T01 (Zea mays), 3'ss of exon 2
gtaaaccattattggtttagcactacatctttcatgatatttttatcaaaatggatttggattgaaattatcaaggtgaactcatgagcagcctccttgactatagacttttctgccttttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG------------
                 ||| ||    | ||   |   | |||  |  |||   ||    |||   ||||  |||   | || ||  |  |  | ||   | |||   || |    || ||  | |||||||||  |||| ||||| || || ||||| ||||||||||| ||| ||||||| || ||||| || |||||||||||  | ||||||            
-----------------tagaacacttttttatgtttcaatttagtggaaaccaatc---attcttattacgaaga--agcttatctgatgtatgct---ccataattttgtt---ctcttggtacagTGAAGTTCGTGGTGATAGAGAAGTTCAGCGAACAATGTTGGAATTACTGAATCAACTGGATGGATTCAGCAGTGATGAGAGAATAAAGGTCATAGCTGCA

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G38030.1 (Glycine max), 3'ss of exon 6
--gtaaaccattattggtttagcactacatctttcat-gatatttttatcaaaatggatttggattgaaattatcaaggtgaactcatgagcagcctccttgactatagacttttctgccttttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG
   | | |    |     ||||   ||||| |   || ||  ||||| ||               |  |   |   |||| || |       ||        ||  |    | |  ||    | ||||||||||||| |||||||| || ||||| || ||||||||||| || ||  | |||||||||||||| |||||||||||||| || || |||
gtattagctggcaaaaaattagatatacatttgcaattgacttttttttc--------ccccctctagagagactcaggtaaaat-----atagtggttccaaccttgatgtatcttgtggctgattgcagTGAAGTAAGTGGAGACAGAGAGGTCCAACGGACAATGTTAGAATTGCTTAATCAGCTTGATGGTTTTAGCAGTGATGACCGGATTAAG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA03G39500.1 (Glycine max), 3'ss of exon 6
----gtaaaccattattggtttagcactacatctttcatgatatttttatcaaaatggatttggattgaaattatcaaggtgaactcatgagcagcctccttgactatagacttttctgcctt--ttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG
    |   |  || |    |||||  |||| | ||   |     || | |     || ||| |||  |   |  |    ||      |  |||||  |      ||    |  ||| ||  ||  | ||||||||||||| |||||||| |||||||| ||||| |||||||| || ||  | |||||||||||||| ||||| |||||||| || || |||
gtgtgaggaaaatcaggaatttagatctacctattcattatcccttctttttttttgtattgggaaagggctggttcttgtttcaataatagcagttttgcaaccttgtaatgtttttgggttgctgattgcagTGAAGTAAGTGGAGACAGGGAGGTACAGCGAACAATGTTAGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGGATTAAG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G42110.1 (Glycine max), 3'ss of exon 4
--gtaaaccattattggtttagcactacatctttcatgatatttt--tatcaaaatggatttggattgaaattatcaaggtgaactcatgagcagcctccttgactatagacttt--tctgccttttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG
   | | | |  |    |||||  |||| | || ||| || ||||  | ||    |  ||| |||  |   |  |    ||      |  | |||  |      ||   ||  ||  |  |    |  |||||||||||| |||||||| |||||| | ||||| |||||||| || ||  | |||||||||||||| ||||| |||||||||||  | |||
gtatgagcaagcaggaatttagatctacgtatt-cattatcttttcttttctttttttattgggaaagggctggttcttgtttcaataatatcagttttgcaaccttgtgatgttatttggttgctggttgcagTGAAGTAAGTGGAGACAGGGAGTTACAGCGAACAATGTTAGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGATCGTGTTAAG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G29250.1 (Glycine max), 3'ss of exon 6
--gtaaaccattattggtttagcactacatctttcat-gatatttttatcaaaatggatttggattgaaattatcaaggtga-actca--tgagcagcctc---cttgactatagacttttctgccttttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG
   | | |    | |  |||||   ||||| |   || ||  ||||| |     |   ||||   |  |   ||||  |||  ||| |  | |   | |||     | ||| |    | |  ||    | ||||||||||||| |||||||| || ||||| || || || ||||| || ||  | |||||||||||||| |||||||||||||| || || |||
gtattagctggcagtaatttagatatacatttgcaattgacttttttctttcttt---tttgaggtagagagatcagagtgttacttagttaaattgtctcggttctaactttgatgtatcttgtggctaattgcagTGAAGTAAGTGGAGACAGAGAGGTACAACGAACTATGTTAGAATTGCTTAATCAGCTTGATGGTTTTAGCAGTGATGACCGGATCAAG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: PP1S340_7V6.1 (Physcomitrella patens), 3'ss of exon 6
---------gtaaaccattattggttta-gcactacatctttcatgatatttttatcaaaatgg-atttggattgaaattatcaaggtgaactcatgagcagcctccttgactatagacttttctgccttttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG
         ||   |    |   || ||  ||  |||||||  |     ||||||    || || |     ||     | |    | | |  | |||| ||  ||  ||    |     | ||| |  | |  | |||||||||| ||||||||| | || |||||| | || ||| |||||||  | |||||||| ||||| || ||||||||||| ||||| || 
gtttgtaatgttctcttcaaagtgtctatacagaacatcttgtagagcgtttttagaggaagggtacacttatcttggtcaaattgattatattatga-caatcttatttgtgacttgatcttcggtttatgttggcagTGAAGTAAGTGGAGATCGTGAAGTGCAGAGAACTATGCTGGAGTTGCTTAATCAGCTGGATGGATTCAGCAGTGATGAGCGCATTAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32245929|gb|CD711748.1|CD711748
EST:     ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
genomic: ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
EST: gi|110384620|gb|EC949072.1|EC949072
EST:     ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
genomic: ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
EST: gi|110387216|gb|EC951866.1|EC951866
EST:     ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
genomic: ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
EST: gi|110369399|gb|EC933558.1|EC933558
EST:     TTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
genomic: TTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
EST: gi|110711112|gb|EE087285.1|EE087285
EST:     ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGGAG-TGCANCGGACAATGTTGGAAGTAAT-G
genomic: ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGG-AGGTGCAGCGGACAATGTTGGA-GTTATTG
EST: gi|71880359|gb|DT029414.1|DT029414
EST:     ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
genomic: ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
EST: gi|34550777|gb|CF518995.1|CF518995
EST:     ATCATTTTTATAGATGAAATTGATCCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
genomic: ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
EST: gi|110718444|gb|EE095285.1|EE095285
EST:     ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
genomic: ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
EST: gi|71878266|gb|DT027321.1|DT027321
EST:     GCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
genomic: GCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
EST: gi|45771197|gb|CN007049.1|CN007049
EST:     ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
genomic: ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
EST: gi|30128623|gb|CB913962.1|CB913962
EST:     ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
genomic: ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
EST: gi|30252313|gb|CB969864.1|CB969864
EST:     ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
genomic: ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
EST: gi|30252322|gb|CB969873.1|CB969873
EST:     ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
genomic: ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
EST: gi|83275987|gb|DV939995.1|DV939995
EST:     TTTATAGATGAAA-TGATGCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
genomic: TTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
EST: gi|110405468|gb|EC971009.1|EC971009
EST:     ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
genomic: ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
EST: gi|30255105|gb|CB971552.1|CB971552
EST:     ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
genomic: ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
EST: gi|30252235|gb|CB969786.1|CB969786
EST:     ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
genomic: ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
EST: gi|30300725|gb|CB977519.1|CB977519
EST:     ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
genomic: ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
EST: gi|110722804|gb|EE099394.1|EE099394
EST:     ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
genomic: ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
EST: gi|110375176|gb|EC940137.1|EC940137
EST:     ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
genomic: ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
EST: gi|30252226|gb|CB969777.1|CB969777
EST:     ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
genomic: ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
EST: gi|34543899|gb|CF512131.1|CF512131
EST:     ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
genomic: ATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
EST: gi|71877789|gb|DT026844.1|DT026844
EST:     ATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAG                         TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA
genomic: ATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgtaaaccatt ... tttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggtgaactcatgagcagcctccttgactatagacttttctgccttttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG
                     ccttgac  putative branch site (score: 4)
                                  cttttctgccttttat  putative PPT
                                            ttttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaaccattattggtttagcactacatctttcatgatatttttatcaaaatggatttggattgaaattatcaaggtgaactcatgagcagcctccttgactatagacttttctgccttttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT