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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acagtcgcatagtttccatattgttaatgatatgagtttgtattccacattgcaatgcacaattttgttcaagtaaaaaattttgttcttctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG

Basic information

species Vitis vinifera
transcript Vv14s0060g00600.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G22600.3 (Glycine max), 3'ss of exon 6
-----------------------------------------------------------------acagtcgca-tagtttccatattg--ttaatgatatgagtttgt-attccacattgcaatgcacaattttgttcaagtaaaaa-----attttgttcttctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG
                                                                   |||     | || |  |   ||  | || |||  ||  |  | | | || | |    || |||    ||||  |   ||||     | |   || || |||||| |||| |||||||| || |||||| ||||  |||||||||||||||||||||| || |||
gtatagactttttatttttatttttgcataacatcattgataatttattctggttctcgtgttacgtagttatggttgtgtttagggtggctaaaagatgggaaataattaattcaaactctggtg-acaggactgttggatggaaaatactaactgaatttttttctgtgcagGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G41420.3 (Glycine max), 3'ss of exon 6
acagtcgcatagtttccatattgttaat--gatatgagtttg--tattccacattgcaatgcacaattttgttcaagtaaaaaat-tttgtt-----cttctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG
      | ||  |||| || ||  | ||  | |   |   ||  || | || |       |    ||     | | | |  || |  ||  |       | ||| || |||| ||||||||||| |||||| | ||  |||| ||||||||||||||||||||||||
------gtatgttttctattttacttatctggtcaaaaactgcttagttcaaaccctggagattcatgactgttaggcagcaactacttactgaaagtgtttctatgcagGTTAATCCACATACTCACCAGGTCAAAATATGCGACTTTGGAAGTGCAAAAGTCTTG

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G28530.2 (Glycine max), 3'ss of exon 6
----------------------------------------------------acagtcgcatagtttccatattgttaatga----tatgagtttgtattccac--attgcaatgc-----acaattttgttcaagtaaaaaattttg------ttcttctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG
                                                       ||  |||||||    |  |||| | |     ||  || | | |  | ||  |||  ||  |     |||    ||||   ||  |||||  |       |  || |||||| |||| |||||||| || |||||| ||||  |||||||||||||||||||||| || |||
gtatggactttgttttaatttgcataaatcattgataatttattctgattctcttgtttcatagttatggttgtgtttaggggagctaaaagatgggaagcaactaattcaaactctgcagacagggctgtt-gggtggaaaatactaactgaatgtttttctgtgcagGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA03G38850.2 (Glycine max), 3'ss of exon 6
----acagtcgcatagtttccatattgttaatgatatgagtttgtattccac-attgcaatgcacaatt-ttgttcaagtaaaa--aattttgttcttctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG
      | ||  ||  | |  || | || ||  |     | ||   |   || || |  || ||  | | ||  |||   || |  || |      || ||| || |||| ||||| || || |||||| ||||  |||||||||||||||||||||||||||||
gtatgtattc-tattttatttatctggtcaaaaactgctgcttagttcaaactatggagattcatgactgttagtcagcaaatactaactgaaagtttttctatgcagGTTAATCCGCACACTCACCAGGTTAAAATATGTGACTTTGGAAGTGCAAAAGTCTTG

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 4
-------------------------------------------------------------------------------acagtcg-catagtttccatattgttaatgatatgagtt-tgtattccacattgcaatgcacaattt----tgttcaagtaaaaaattttgttcttctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG
                                                                                   ||| ||| | |   |  | |||| ||| |||  |  | |    |||     | | ||  | ||    || |   |||| ||| ||   | | |   |   |||||||||| ||||| |||||||| || || ||||| ||||||||||| |||||  ||
gtacgtgtgtccgacgaatcttgtcatgtgttcaagtatcttgaaaacacgatgctgactgtttaagcactcgtatttgttgctcggcatgggtggaagctggttactgagatgtttggtatgagtcacgggaaagtacaggagttgccgtggtgtcgtaacaaacttgtgtttgcatggcacagGTGAATCCTCATACGCACCAGCTGAAACTGTGTGATTTTGGAAGTGCGAAAGTGCTG

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: PP1S52_55V6.1 (Physcomitrella patens), 3'ss of exon 5
------------------------------------------------------acagtcgcatagtttccatattgttaatg-atatgagtttgtattcca----cattg---------caatgcacaattttgttcaagtaaaaaattttgttcttctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG
                                                        || |  | ||||    |||| || | |   ||||| ||  |||  |    ||| |         ||| |        |||     | || |  || |||  | |  ||| |||||||||| || || || ||||| |||||||| |||||||||||||| ||||| |||
gtaatattgtgttgtgagtattagtatgtaaatatggtcgactcgagcacagtttaagaccgacagttgtggtattattgaggtggatgaggtttgattgtatgagcatcgaggagttgtcaaggtgtggaagtgtggtgatgaagaggttggtttgtgtg-gtgcagGTGAATCCCCACACGCATCAGCTAAAGCTATGCGACTTTGGAAGTGCGAAAGTTTTG

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ07923 (Selaginella moellendorffii), 3'ss of exon 6
acagtcgcatagtttccatattgttaatgatatgagtttgtattccacattgcaatgcacaattttgttcaagtaaaaaattttgtt--cttctctgtgt-agGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG
                                      |  |  || | |||   |    | |  ||      | |    |||  ||  ||  | ||  | |||| |||||||| || |||||||| ||||| ||||||||||| ||||| |||||||||
-------------------------------------gtaaaaccctccttgtgctttcgagtcctggaattcttatgcttttcttttgctggtttgcatcagGTAAATCCACACACACACCAGCTCAAGCTCTGTGACTTTGGGAGTGCTAAAGTCTTG

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ10962 (Selaginella moellendorffii), 3'ss of exon 5
acagtcgcatagtttccatattgttaatgatatgagtttgtattccacattgcaatgcacaattttgttcaagtaaaaaattttgttcttctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG
                                   ||  |   |||   |||   |       ||  ||   |||   | |  | || || |  ||  |||| ||||| ||||| |||||||| |||||||||||||| || || || |||||  ||
-----------------------------------gtaggaggtcc---ttgtcctttgagggttgattt--gtacttactgcttttgttgtaagtacagGTTAATCCCCATACACACCAGCTGAAGCTATGTGACTTCGGCAGCGCCAAAGTGCTG

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 6
acagtcgcatagtttccatattgttaatgatatgagtttgtattccacattgcaatgcacaattttgttcaagtaaaaaattttgttcttctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG
                                | |       ||   | ||  | | |   | ||  |     |      ||||| |    |   |  |||| |||||||| || |||||||| ||||| ||||||||||| ||||| |||||||||
-------------------------------gtaaaccctccttgtgctttcgagtcctggaattcttatgcttt---tcttttgctggatttcat-cagGTAAATCCACACACACACCAGCTCAAGCTCTGTGACTTTGGGAGTGCTAAAGTCTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30325615|gb|CD008877.1|CD008877
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTNTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|32270380|gb|CD719539.1|CD719539
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|32270854|gb|CD720013.1|CD720013
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|71862026|gb|DT011081.1|DT011081
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|71856504|gb|DT005559.1|DT005559
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|156737184|gb|EV241305.1|EV241305
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|161714435|gb|FC064434.1|FC064434
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|30326170|gb|CD009432.1|CD009432
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|34546808|gb|CF515040.1|CF515040
EST:     CGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: CGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|110700433|gb|EE078469.1|EE078469
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|161718942|gb|FC067353.1|FC067353
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGA-TCCACATACCC-CCAGCTTA-GCTATGTGACTTTG-AAGTGCAAA-
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|110712249|gb|EE089658.1|EE089658
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGGCTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|30256245|gb|CB972088.1|CB972088
EST:     TCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: TCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAA-TCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|349828876|gb|FQ419209.1|FQ419209
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|30327244|gb|CD010506.1|CD010506
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|33405711|gb|CF211338.1|CF211338
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|30302437|gb|CB979231.1|CB979231
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGTTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|30327832|gb|CD011094.1|CD011094
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|34543640|gb|CF511872.1|CF511872
EST:     TCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: TCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|30136122|gb|CB921460.1|CB921460
EST:     ATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|71861763|gb|DT010818.1|DT010818
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|30327902|gb|CD011164.1|CD011164
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCANAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|30325367|gb|CD008629.1|CD008629
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|30325513|gb|CD008775.1|CD008775
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|110694879|gb|EE072256.1|EE072256
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|34547149|gb|CF515381.1|CF515381
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|30325747|gb|CD009009.1|CD009009
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|30325454|gb|CD008716.1|CD008716
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|33404123|gb|CF209750.1|CF209750
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|71864551|gb|DT013606.1|DT013606
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|110729460|gb|EE105432.1|EE105432
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|30132732|gb|CB918071.1|CB918071
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|30129063|gb|CB914402.1|CB914402
EST:     ATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
EST: gi|71864720|gb|DT013775.1|DT013775
EST:     ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTG                         GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA
genomic: ATCGCAGTATTGGAGTTTGTCATAGGGACATCAAACCTCAAAATCTTTTGgtatgtttat ... ctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacattgcaatgcacaattttgttcaagtaaaaaattttgttcttctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG
                                   ttttgttcttctctgt  CT-rich tract
               aattttgttcaagtaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acagtcgcatagtttccatattgttaatgatatgagtttgtattccacattgcaatgcacaattttgttcaagtaaaaaattttgttcttctctgtgtagGTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - ccacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - caatgca
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