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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacctttgttattctgaaaaatactcaagtcagaaattttcagttactacatactttcagagtgtcttatctatatattgttatgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG

Basic information

species Vitis vinifera
transcript Vv14s0060g00550.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g00550.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G034083_T01 (Zea mays), 3'ss of exon 5
---------------------------gtatacctttgttattctgaaaaatactcaagtcagaaattttcagttact----acatactttcagagtgtcttatctata--------tattgttatgcta-acagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG
                             | | ||  |||   ||  | | || |     |||  ||||| |  |       | |   |||   | | | || || ||          ||| || |  |  |||||||||||||||||| |||||| || || ||||||||||| || || ||| | ||  | |  || ||     ||||||| |||
gtatgattcatgctttcgatgtacctcacagatctcagttgc-ctccatattaattgtaccagccatttttatgtgaaagggagacgtttttctactatattgtcaatcataacagccattattttcatgtacagGTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33402711|gb|CF208338.1|CF208338
EST:     GATATGAGGGGAGAATTGGATGATACTTCTGCTTTTAAAATCTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTATTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|33409351|gb|CF214978.1|CF214978
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|110724668|gb|EE100695.1|EE100695
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAA
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAA
EST: gi|71870972|gb|DT020027.1|DT020027
EST:     GGATGATACTGCTGCTTTT-AAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|351042212|gb|FQ442679.1|FQ442679
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTT
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTT
EST: gi|110424854|gb|EC991228.1|EC991228
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|351036953|gb|FQ459475.1|FQ459475
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGA
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGA
EST: gi|29783688|gb|CB350023.2|CB350023
EST:     AATTGGATGATACTGCTGCTTTTANAAACTTCAAGAC                         GTGGGGCAATATTGAGTCGAT-C-CTGCCTTTTGGAAGAGTACTAAGCCCC
genomic: AATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGT--TTCCGCTGCCTTTTGGAAGAGTACTAAGCCCC
EST: gi|30256302|gb|CB972145.1|CB972145
EST:     AATTGGATGATACTGCTGCTTTTANAAACTTCAAGAC                         GTGGGGCAATATTGAGTCGAT-C-CTGCCTTTTGGAAGAGTACTAAGCCCC
genomic: AATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGT--TTCCGCTGCCTTTTGGAAGAGTACTAAGCCCC
EST: gi|71857604|gb|DT006659.1|DT006659
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|33410181|gb|CF215808.1|CF215808
EST:     ATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: ATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|30301408|gb|CB978202.1|CB978202
EST:     GGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|30256368|gb|CB972211.1|CB972211
EST:     TAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: TAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|33404234|gb|CF209861.1|CF209861
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|71870674|gb|DT019729.1|DT019729
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|352794639|gb|FQ475137.1|FQ475137
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGNGGGCA-TATTGAGTTTCCGCTGCCTTTTGGAAAAGTA
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTG-GGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTA
EST: gi|33401628|gb|CF207255.1|CF207255
EST:     ATGATACTGCTGCTTTT-AAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: ATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|156735476|gb|EV239597.1|EV239597
EST:     ATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAAACTTCA-GAC                         GTGNGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCA
genomic: ATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAA-CTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCA
EST: gi|77578610|gb|DV218094.1|DV218094
EST:     GGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|349832974|gb|FQ416352.1|FQ416352
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|110730113|gb|EE106821.1|EE106821
EST:     ATATGAGGGGAAAATTGGATGATACTGCTGCTTTCAAAA-CTTTCA-GAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTT
genomic: ATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTT-CAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTT
EST: gi|110718171|gb|EE094700.1|EE094700
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAA-CTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGA-TACTAAGCCC-AC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|110700143|gb|EE077843.1|EE077843
EST:     GATATGANGGGAGAATTGGATGATACTGCTGCTTTCAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCCTTTGGAA-AGTACTAAGCCCCA-
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|161709750|gb|FC058051.1|FC058051
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|110730321|gb|EE107269.1|EE107269
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTCAAAAACT-CAAGAC                         GTGGGGCAATATTGAGTTTCC-CTGCCTTTTGGAAGA-TACTAAGCCCCCC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|30301339|gb|CB978133.1|CB978133
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|30298308|gb|CB975102.1|CB975102
EST:     TTTTAAAAATTTCAAGATC                         G-GGGGCAATATTGAGTTTCCGCTGCCTTTTTGGAAGAGTACTAAGCCCC
genomic: TTTTAAAAACTTCAAGA-Cgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCC-TTTTGGAAGAGTACTAAGCCCC
EST: gi|71855750|gb|DT004805.1|DT004805
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAG
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAG
EST: gi|294966761|gb|GW837780.1|GW837780
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTCCCGCTGCCTTTTGGAAAGAGTACTAAGCC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAA-GAGTACTAAGCC
EST: gi|26256993|gb|CA808056.1|CA808056
EST:     ATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAAC                         GTGGGGCAATATTTGAGTT-CCGCTGCCTTTTTGGAAAAGAACTAAACCC
genomic: ATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGA-Cgtataccttt ... atgctaacagGTGGGGCAATATT-GAGTTTCCGCTGCCTTTT-GGAAGAGTACTAAGCCC
EST: gi|77586266|gb|DV222232.1|DV222232
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|30298235|gb|CB975029.1|CB975029
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|161711977|gb|FC060844.1|FC060844
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|161712114|gb|FC061486.1|FC061486
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|156735475|gb|EV239596.1|EV239596
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|110723142|gb|EE100116.1|EE100116
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|33404311|gb|CF209938.1|CF209938
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|30253098|gb|CB970649.1|CB970649
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|110363975|gb|EC927611.1|EC927611
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|33409430|gb|CF215057.1|CF215057
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|33409787|gb|CF215414.1|CF215414
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAA-CTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|77579387|gb|DV218527.1|DV218527
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|110698064|gb|EE075650.1|EE075650
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTCCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|110710370|gb|EE086656.1|EE086656
EST:     AAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: AAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|37183558|gb|CF602912.1|CF602912
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|37188175|gb|CF607524.1|CF607524
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|161712274|gb|FC061897.1|FC061897
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|71871483|gb|DT020538.1|DT020538
EST:     GGATGATACTGCTGCTTTT-AAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
EST: gi|161713803|gb|FC063791.1|FC063791
EST:     GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGAC                         GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC
genomic: GATATGAGGGGAGAATTGGATGATACTGCTGCTTTTAAAAACTTCAAGACgtataccttt ... atgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcagttactacatactttcagagtgtcttatctatatattgttatgctaacagGTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG
                             ttatctatatattgtt  TA-rich tract