1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tctttggatggctttattatgaaatatttttgcatctcattatagatttcattatacaaacaactgtatactacttgtgacattaacttgttttcattagGTTCAAGTGCATAGATTTGGATGGAAATGGAGTTCTGACAAGGAATGAAATGCAATTCTTTTATGAGGAGCAGTTGCATCGAATGGAATGCATGGCCCAA
species | Vitis vinifera |
transcript | Vv14s0036g00750.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCATACTGTCGGAAGAGGATAAAACATCTGAGCCTAGTCTTGAGTATTG GTTCAAGTGCATAGATTTGGATGGAAATGGAGTTCTGACAAGGAATGAAATEST: gi|161712742|gb|FC062314.1|FC062314
genomic: TTCATACTGTCGGAAGAGGATAAAACATCTGAGCCTAGTCTTGAGTATTGgtatttctgc ... ttttcattagGTTCAAGTGCATAGATTTGGATGGAAATGGAGTTCTGACAAGGAATGAAAT
EST: TTCATACTGTCGGAAGAGGATAAAACATCTGAGCCTAGTCTTGAGTATTG GTTCAAGTGCATAGATTTGGATGGAAATGGAGTTCTGACAAGGAATGAAAT
genomic: TTCATACTGTCGGAAGAGGATAAAACATCTGAGCCTAGTCTTGAGTATTGgtatttctgc ... ttttcattagGTTCAAGTGCATAGATTTGGATGGAAATGGAGTTCTGACAAGGAATGAAAT
atttcattatacaaacaactgtatactacttgtgacattaacttgttttcattagGTTCAAGTGCATAGATTTGGATGGAAATGGAGTTCTGACAAGGAATGAAATGCAATTCTTTTATGAGGAGCAGTTGCATCGAATGGAATGCATGGCCCAA
cattaac putative branch site (score: 2)
cttgttttc CT-rich tract
attatacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttggatggctttattatgaaatatttttgcatctcattatagatttcattatacaaacaactgtatactacttgtgacattaacttgttttcattagGTTCAAGTGCATAGATTTGGATGGAAATGGAGTTCTGACAAGGAATGAAATGCAATTCTTTTATGAGGAGCAGTTGCATCGAATGGAATGCATGGCCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - tggatgg
- - - - - - - - - -tgaaata
- - - - - - - - - - - - - - - - catctca
- - - - - - - - - - - - - - - - - - - - - - - - - - -atacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattaac