1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttagtagttccatcttttttcttggaaactaagcaaatagatatttttgtattgattctaaaaagcatctttattttttttcagACACGAGAGTTCTTTGGTTCATTTTGCAGAACAACATTGTGTGATCCTCTTAGACACCTTTATTATAAATTCAGATCTGGTGGTGCACTTCCTTATTCTA
species | Vitis vinifera |
transcript | Vv14s0036g00430.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGATTCCATTGCTTTCTCTTCTTTTCTGTTACTATAGGTCTTTTCTTCAG ACACGAGAGTTCTTTGGTTCATTTTGCAGAACAACATTGTGTGATCCTCTTEST: gi|161711048|gb|FC059455.1|FC059455
genomic: TGATTCCATTGCTTGCTCTTCTTTTCTGTTACTATAGGTCTTTTCTTCAGgttagtagtt ... tttttttcagACACGAGAGTTCTTTGGTTCATTTTGCAGAACAACATTGTGTGATCCTCTT
EST: TGATTCCATTGCTTGCTCTTCTTTTCTGTTACTATAGGTC-TTTCTTCAG ACACGAGAGTTCTTTGGTTCATTTTGCAGAACAACATTGTGTGATCCTCTTEST: gi|71877245|gb|DT026300.1|DT026300
genomic: TGATTCCATTGCTTGCTCTTCTTTTCTGTTACTATAGGTCTTTTCTTCAGgttagtagtt ... tttttttcagACACGAGAGTTCTTTGGTTCATTTTGCAGAACAACATTGTGTGATCCTCTT
EST: AGGTCTTTTCTTCAG ACACGAGAGTTCTTTGGTTCATTTTGCAGAACAACATTGTGTGATCCTCTTEST: gi|110359437|gb|EC920918.1|EC920918
genomic: AGGTCTTTTCTTCAGgttagtagtt ... tttttttcagACACGAGAGTTCTTTGGTTCATTTTGCAGAACAACATTGTGTGATCCTCTT
EST: TGATTCCATTGCTTGCTCTTCTTTTCTGTTACTATAGGTCTTTTCTTCAG ACACGAGAGTTCTTTGGTTCATTTTGCAGAACAACATTGTGTGATCCTCTTEST: gi|110721118|gb|EE097748.1|EE097748
genomic: TGATTCCATTGCTTGCTCTTCTTTTCTGTTACTATAGGTCTTTTCTTCAGgttagtagtt ... tttttttcagACACGAGAGTTCTTTGGTTCATTTTGCAGAACAACATTGTGTGATCCTCTT
EST: TGATTCCATTGCTTGCTCTTCTTTTCTGTTACTATAGGTCTTTTCTTCAG ACACGAGAGTTCTTTGGTTCATTTTGCAGAACAACATTGTGTGATCCTCTT
genomic: TGATTCCATTGCTTGCTCTTCTTTTCTGTTACTATAGGTCTTTTCTTCAGgttagtagtt ... tttttttcagACACGAGAGTTCTTTGGTTCATTTTGCAGAACAACATTGTGTGATCCTCTT
taagcaaatagatatttttgtattgattctaaaaagcatctttattttttttcagACACGAGAGTTCTTTGGTTCATTTTGCAGAACAACATTGTGTGATCCTCTTAGACACCTTTATTATAAATTCAGATCTGGTGGTGCACTTCCTTATTCTA
ttctaaa putative branch site (score: 2)
catctttatttttttt putative PPT
aaatagatatttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtagttccatcttttttcttggaaactaagcaaatagatatttttgtattgattctaaaaagcatctttattttttttcagACACGAGAGTTCTTTGGTTCATTTTGCAGAACAACATTGTGTGATCCTCTTAGACACCTTTATTATAAATTCAGATCTGGTGGTGCACTTCCTTATTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG