Sequence
atgc intronic sequence ATGC exonic sequence...atagttatcccagtctactttatgtacatgtgatgtggttatctggttatgaaccttatgtaattgttgtcttacttaaaatctcatttgttttatacagATAAGCTTCTCTGATTGGTTCCTGTCCAAAGGTGGGACACGCATGAGCATCCAGAGAATGTGGGATCCTGTTGCTTATGCCCTCGGGTTTATTGACTGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G37170.1 (Glycine max), 3'ss of exon 6
atagttatcccagtctactttatgtacatgtgatgtggttatctggttatgaaccttatgta-attgttgtcttacttaaaatctcatttgttttatacagATAAGCTTCTCTGATTGGTTCCTGTCCAAAGGTGGGACACGCATGAGCATCCAGAGAATGTGGGATCCTGTTGCTTATGCCCTCGGGTTTATTGACTGTG
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-aatctatatttactctttcactttgtattgcttgtgtttgtcaatcttctttctttatgtccaatgttgttcttttaaccattatgtgaatttgttacagATTAGCTTTTCAGACTGGTTTTTATCCAAAGGTGGCACACGCATGAGTATTACAAAAATGTGGGATCCAGTTGCCTATGCCCTTGGGTTTATTGACTGTG
upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G30220.1 (Glycine max), 3'ss of exon 6
----atagttatcccagtctactttatgtacatgtgatgtggttat-ctggttatgaaccttatgtaattgttgtcttacttaaaatctcatttgttttatacagATAAGCTTCTCTGATTGGTTCCTGTCCAAAGGTGGGACACGCATGAGCATCCAGAGAATGTGGGATCCTGTTGCTTATGCCCTCGGGTTTATTGACTGTG
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accgatacttgctgccctagaatctaagtttactctttcactttatattgattgtg-----tttgccaatcttgttcttttaaccattatgtgcatttgtaacagATTAGCTTTTCAGATTGGTTTTTATCCAAAGGTGGCACACGCATGAGTATTACAAAAATGTGGGATCCAGTTGCCTATGCCCTTGGGTTTATCGACTGTG
upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G04870.2 (Arabidopsis thaliana), 3'ss of exon 7
atagttatcccagtctactttatgtacatg-tgatgtggttatctggttatgaaccttatgtaattgttgtcttacttaaaatctc--atttgttttatacagATAAGCTTCTCTGATTGGTTCCTGTCCAAAGGTGGGACACGCATGAGCATCCAGAGAATGTGGGATCCTGTTGCTTATGCCCTCGGGTTTATTGACTGTG
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-----------------------gtaaagaatgataacctgttcttcttctcatctgtac-tactatttgtgttctctaaattttctgaaatactttttgcagATAAGTTTCTCGGATTGGTTCCTGTCAAAAGGTGGGACACGGGCAAGTATCCAGAGAATGTGGGATCCTGTTGCTTATGCTCTAGGTTTCATAGACTGCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttatgaaccttatgtaattgttgtcttacttaaaatctcatttgttttatacagATAAGCTTCTCTGATTGGTTCCTGTCCAAAGGTGGGACACGCATGAGCATCCAGAGAATGTGGGATCCTGTTGCTTATGCCCTCGGGTTTATTGACTGTG
gtcttac putative branch site (score: 3)
tttgtttt putative PPT
ttaaaatctcatttgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atagttatcccagtctactttatgtacatgtgatgtggttatctggttatgaaccttatgtaattgttgtcttacttaaaatctcatttgttttatacagATAAGCTTCTCTGATTGGTTCCTGTCCAAAGGTGGGACACGCATGAGCATCCAGAGAATGTGGGATCCTGTTGCTTATGCCCTCGGGTTTATTGACTGTG
- - - - cccagtc
- - - - - - - - - - - - - catgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - -ccttatg