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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaaaagatcatctccttttgcctttttttttttttttgttattgtttgattttccttcctcaaatgaagcatggaactctctctttgcagACCACATTCGTAACATCTATTTCCCATTCGACATTGAGATGGATACAGCATTGAGCGTTGCAACTGAAATGGTTGCTGAACTGGATATTACAGACCAAGA

Basic information

species Vitis vinifera
transcript Vv14s0030g01660.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g01660.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G43210.1 (Glycine max), 3'ss of exon 6
gtcaaaagatcatctccttttgcctttttttttttttttgttattgtttgatt------ttccttcctcaaatgaagcatggaactctctctttg-cagACCACATTCGTAACATCTATTTCCCATTCGACATTGAGATGGATACAGCATTGAGCGTTGCAACTGAAATGGTTGCTGAACTGGATATTACAGACCAAGA
||   || || |  |   ||    |  |  | | |     | | |  |  |||      |    |     | |||    | ||  | | | | || ||| ||| ||||| || || ||||||||||| ||||  |||| ||| |||||||| || || ||||||||||||||||| ||||| || ||||| || || ||
gttggaaaattacttttattgttttggtactctatccccatgacttgtatattgcagaatggaatttaagattgataatttgacttgtttatgtggcagGCCATATTCGGAATATTTATTTCCCATTTGACACAGAGACGGACACAGCATTAAGTGTAGCAACTGAAATGGTTGCAGAACTCGACATTACTGATCAGGA

upper sequence: Vv14s0030g01660.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA03G40550.1 (Glycine max), 3'ss of exon 4
gtcaaaagatcatctccttttgcctttttttttttttttgttattgtttg-attttccttcctcaaatg-aagcatggaactctctcttt--------gcagACCACATTCGTAACATCTATTTCCCATTCGACATTGAGATGGATACAGCATTGAGCGTTGCAACTGAAATGGTTGCTGAACTGGATATTACAGACCAAGA
||   || || | ||  | |||  ||||  |  | | | |  ||   ||| || || |    |  |||  |||  ||  | | |  |||         |||| ||| ||||| || || ||||| ||||| ||||| | || ||| |||||||| || || ||||||||||||||||| ||||| || ||||| || || ||
gttggaaaatta-cttttgttg--ttttggtactctatagccatgacttgtatattgcaggatggaatttaagattgataatttgacttatttatgtggcagGCCATATTCGGAATATTTATTTTCCATTTGACATAGGGACGGACACAGCATTAAGTGTAGCAACTGAAATGGTTGCAGAACTCGACATTACTGATCAGGA

upper sequence: Vv14s0030g01660.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G04910.1 (Arabidopsis thaliana), 3'ss of exon 6
gtcaaaagatcatct---ccttttgcctttttttttttttttgttattgtttg------attttccttcct-caaatgaagcatggaactctctctttgcagACCACATTCGTAACATCTATTTCCCATTCGACATTGAGATGGATACAGCATTGAGCGTTGCAACTGAAATGGTTGCTGAACTGGATATTACAGACCAAGA
|| | || ||  |||    ||||| | | |||  |    | ||     |  ||      ||     ||| | ||  |||  |||||| ||   |  ||||||  |   | || ||||| || |||||||| |||||||||| ||| || ||||||||||||||||| || ||||| || |||||||||||    || || | 
gtaacaatattctctttatcttttccttgtttcataacctatgaagaagagtggaaaaaatgcagtttctttcatttgattcatgga-ctggtttgttgcagGACGTGTCCGAAACATTTACTTCCCATTTGACATTGAGACGGACACCGCATTGAGCGTTGCAACAGAGATGGTAGCGGAACTGGATATGGACGATCATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttattgtttgattttccttcctcaaatgaagcatggaactctctctttgcagACCACATTCGTAACATCTATTTCCCATTCGACATTGAGATGGATACAGCATTGAGCGTTGCAACTGAAATGGTTGCTGAACTGGATATTACAGACCAAGA
        gtttgat  putative branch site (score: 5)
                                         ctctctctttgc  putative PPT
         tttgatttt  TA-rich tract