Sequence
atgc intronic sequence ATGC exonic sequencegtgggttccaggtttactcaggcttttgcaacttctttgatggattaatttgatttggtaattacgttatctgtttagttctatatatctagCTTAACGAGGATCACCATTTTTCGGCGTGGGGTTGCTTCGGAAGCTAAAGCAGAAGTAAGCAAACTGTGGATGGTTGACCTTGGAGGAAGTGAAAGATTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g01360.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G30060.1 (Glycine max), 3'ss of exon 8
gtgggttccaggtttactcaggcttttgcaacttctttgatggattaatttgatttggtaattacgttatctgtttagttctatatatctagCTTAACGAGGATCACCATTTTTCGGCGTGGGGTTGCTTCGGAAGCTAAAGCAGAAGTAAGCAAACTGTGGATGGTTGACCTTGGAGGAAGTGAAAGATTG
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gtgggttataggtttacttagatacttcaaagtattttaatgggttt-ctcagcttgatagttacgttatctgtttagcttcatatatctagCTTGACGAGGATAAGCATATTTCGGCGTGGGGATGCATTGGAAGCCAAAAGTGAAGTAAGTAAATTGTGGATGATTGATCTTGGAGGCAGCGAAAGGTTG
upper sequence: Vv14s0030g01360.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G22390.1 (Glycine max), 3'ss of exon 7
------------------------------------------------------------------------gtgggttccaggtttactcaggcttttgcaacttctttgatggattaatttgatttggtaattacgttatctgtttagttctatatatctagCTTAACGAGGATCACCATTTTTCGGCGTGGGGTTGCTTCGGAAGCTAAAGCAGAAGTAAGCAAACTGTGGATGGTTGACCTTGGAGGAAGTGAAAGATTG
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gtaaccttttatctccaatctcagatctacctcttggactaatgtgaatgaggcatcaagcaggtcacacaggtgggttataggtttacttagatacttcagagtattttaatgggttt-ctcagcttgatagttacattatctgtttagcttcatatatctagCTTGACGAGGATAAACATATTTCGGCATGGGGATGCATTGGAAGCCAAAAGTGAAGTAAGTAAATTGTGGATGATTGATCTTGAAGGCTGCAAACAGTTG
upper sequence: Vv14s0030g01360.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G37340.1 (Glycine max), 3'ss of exon 6
gtgggttccaggtttactcaggcttttgcaacttctttgatggattaatttgatttggtaattacgttatctgtttagttctatatatctagCTTAACGAGGATCACCATTTTTCGGCGTGGGGTTGCTTCGGAAGCTAAAGCAGAAGTAAGCAAACTGTGGATGGTTGACCTTGGAGGAAGTGAAAGATTG
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gtgggttataggtttacttagatacttcaaagtattttaatgggttt-ctcagcttgatagttacgttatctgtttagcttcatatatctagCTTGACGAGGATAAGCATATTTCGACACGGGGATGCTTTGGAAGTCAAAAGTGAAGTAAGTAAATTGTGGATGATTGATCTTGGAGGGAGCGAACGGTTG
upper sequence: Vv14s0030g01360.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G22390.2 (Glycine max), 3'ss of exon 3
gtgggttccaggtttactcaggcttttgcaacttctttgatggattaatttgatttggtaattacgttatctgtttagttctatatatctagCTTAACGAGGATCACCATTTTTCGGCGTGGGGTTGCTTCGGAAGCTAAAGCAGAAGTAAGCAAACTGTGGATGGTTGACCTTGGAGGAAGTGAAAGATTG
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gtgggttataggtttacttagatacttcagagtattttaatgggttt-ctcagcttgatagttacattatctgtttagcttcatatatctagCTTGACGAGGATAAACATATTTCGGCATGGGGATGCATTGGAAGCCAAAAGTGAAGTAAGTAAATTGTGGATGATTGATCTTGAAGGCTGCAAACAGTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37190513|gb|CF609862.1|CF609862EST: AGATCTACTTCATGGACTAACGTGAATGAAGCATCTAGCAGGTCTCATTG CTTAACGAGGATCACCATTTTTCGGCGTGGGGTTGCTTCGGAAGCTAAAGC
genomic: AGATCTACTTCATGGACTAACGTGAATGAAGCATCTAGCAGGTCTCATTGgtgggttcca ... atatatctagCTTAACGAGGATCACCATTTTTCGGCGTGGGGTTGCTTCGGAAGCTAAAGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgatggattaatttgatttggtaattacgttatctgtttagttctatatatctagCTTAACGAGGATCACCATTTTTCGGCGTGGGGTTGCTTCGGAAGCTAAAGCAGAAGTAAGCAAACTGTGGATGGTTGACCTTGGAGGAAGTGAAAGATTG
attaatttgatttggt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgggttccaggtttactcaggcttttgcaacttctttgatggattaatttgatttggtaattacgttatctgtttagttctatatatctagCTTAACGAGGATCACCATTTTTCGGCGTGGGGTTGCTTCGGAAGCTAAAGCAGAAGTAAGCAAACTGTGGATGGTTGACCTTGGAGGAAGTGAAAGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA