Sequence
atgc intronic sequence ATGC exonic sequencegtagtaatgtttcaatttttcattattattattatgctattttttgttcgtttttatgaatgcctttgaaactgaaacacattttaaatggtcagATCTCACCAACTGAAATTCGTGGTGCGCTTGGGTCTGTCAATCAACTTTTTATTTGTATTGGGATTCTTGCAGCATTGGTGGCTGGATTACCTCTAGCCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0006g02720.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os01g04190.2 (Oryza sativa), 3'ss of exon 6
---gtagtaat-----gtttcaatttttcattattattattatgctattttttgttcgtttttatgaatgcctttga-aactgaaacacat---tttaaatggtcagATCTCACCAACTGAAATTCGTGGTGCGCTTGGGTCTGTCAATCAACTTTTTATTTGTATTGGGATTCTTGCAGCATTGGTGGCTGGATTACCTCTAGCCA
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gttgtgataactgataaattcaaattgttgaaatgattgttcagctactactggctaggttct-tgaacatgcccaacaactgagctatttacgcttgcgcctgcagATTTCACCCACTGAAATACGTGGAGCACTTGGTTCTGTTAATCAGCTTTTTATCTGCATTGGAATTCTTGCTGCTCTGGTAGCTGGATTACCTCTGGCAG
upper sequence: Vv14s0006g02720.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G153704_T01 (Zea mays), 3'ss of exon 10
-------------gtagtaatgtttcaatttttca----ttattattattatgctat---tttttgttcgtttttatgaatgcctttgaaactgaaacacattttaaatggtcagATCTCACCAACTGAAATTCGTGGTGCGCTTGGGTCTGTCAATCAACTTTTTATTTGTATTGGGATTCTTGCAGCATTGGTGGCTGGATTACCTCTAGCCA
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gttgtgatacgttgacatgacagttgctttgttcaaaacctaatgctgttgtgatatgtacttctgcctgtgttgatgaacatccccaacaaatgaatttcctgtactctg-cagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTTATTTGCATTGGAATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAG
upper sequence: Vv14s0006g02720.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G098011_T02 (Zea mays), 3'ss of exon 6
-----------------------------------------------gtagt--aatgtttcaatttttcattattattattatgctattttttgttcgtttttatgaatgcctttgaaactgaaacacattttaaatggtcagATCTCACCAACTGAAATTCGTGGTGCGCTTGGGTCTGTCAATCAACTTTTTATTTGTATTGGGATTCTTGCAGCATTGGTGGCTGGATTACCTCTAGCCA
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gttgtgatacgatgaaacgacagttgctttgttcaaaacctgatgctgttgtgaaatgctacagttactt-ctgtctttgtt-caatagctactgcatgcattgacgaacatctccaaca----aatgaacttgtactttgcagATATCACCAACTGAAATTCGTGGAACACTTGGTTCCGTTAATCAACTTTTTATCTGCATTGGAATTCTTGCAGCTTTGTTAGCTGGATTGCCTTTGGCAG
upper sequence: Vv14s0006g02720.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G07780.1 (Glycine max), 3'ss of exon 6
gtagtaatgtttcaatttttcattattattattatgctatt--ttttgttcgtttttatgaatgcctttgaaactgaaacacattttaaatggtcagATCTCACCAACTGAAATTCGTGGTGCGCTTGGGTCTGTCAATCAACTTTTTATTTGTATTGGGATTCTTGCAGCATTGGTGGCTGGATTACCTCTAGCCA
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------gtgcttta-tatattattcttatctttgagatcatagactaaataatttatgtggactgtgtggtaactc-------ctcttaatgggcagATTTCACCAACTGAAATTCGTGGTGCGCTAGGATCTGTTAATCAACTTTTTATATGCATTGGGATTCTTCTGGCACTGGTGGCTGGGCTGCCTCTGGCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110370956|gb|EC934605.1|EC934605EST: TGGAATTGGCATCTCATCTGCACTTGTGCCACTTTACATATCTGAG ATCTCACCAACTGAAATTCGTGGTGCGCTTGGGTCTGTCAATCAACTTTTT
genomic: TGGAATTGGCATCTCATCTGCACTTGTGCCACTTTACATATCTGAGgtagtaatgt ... aaatggtcagATCTCACCAACTGAAATTCGTGGTGCGCTTGGGTCTGTCAATCAACTTTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttgttcgtttttatgaatgcctttgaaactgaaacacattttaaatggtcagATCTCACCAACTGAAATTCGTGGTGCGCTTGGGTCTGTCAATCAACTTTTTATTTGTATTGGGATTCTTGCAGCATTGGTGGCTGGATTACCTCTAGCCA
aaacacattttaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagtaatgtttcaatttttcattattattattatgctattttttgttcgtttttatgaatgcctttgaaactgaaacacattttaaatggtcagATCTCACCAACTGAAATTCGTGGTGCGCTTGGGTCTGTCAATCAACTTTTTATTTGTATTGGGATTCTTGCAGCATTGGTGGCTGGATTACCTCTAGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA