1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttaagcagcactatactgcattagttactttgatgaagtggctatggattgtgtcttatatttgctggagtgcttatgaatctgcttttatcttttatagGAAGAGGACCGACTAAGAGATGCTCTCAAGTTTGCAAATGCTTGTGGTGCATTGACTGTCATGGAGAGAGGTGCAATTCCAGCTTTGCCATCTAGAGAAG
species | Vitis vinifera |
transcript | Vv14s0006g01410.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGTTGCTGGAATATTATCACAACTAGCTGCTGATCTTTCCTTGCTTCAG GAAGAGGACCGACTAAGAGATGCTCTCAAGTTTGCAAATGCTTGTGGTGCAEST: gi|110376513|gb|EC941577.1|EC941577
genomic: TTGTTGCTGGAATATTATCACAACTAGCTGCTGATCTTTCCTTGCTTCAGgtactgcttt ... tcttttatagGAAGAGGACCGACTAAGAGATGCTCTCAAGTTTGCAAATGCTTGTGGTGCA
EST: TTGTTGCTGGAATATTATCACAACTAGCTGCTGATCTTTCCTTGCTTCAG GAAGAGGACCGACTAAGAGATGCTCTCAAGTTTGCAAATGCTTGTGGTGCAEST: gi|32246251|gb|CD712070.1|CD712070
genomic: TTGTTGCTGGAATATTATCACAACTAGCTGCTGATCTTTCCTTGCTTCAGgtactgcttt ... tcttttatagGAAGAGGACCGACTAAGAGATGCTCTCAAGTTTGCAAATGCTTGTGGTGCA
EST: TTGTTGCTGGAATATTATCACAACTAGCTGCTGATCTTTCCTTGCTTCAG GAAGAGGACCGACTAAGAGATGCTCTCAAGTTTGCAAATGCTTGTGGTGCAEST: gi|32245671|gb|CD711490.1|CD711490
genomic: TTGTTGCTGGAATATTATCACAACTAGCTGCTGATCTTTCCTTGCTTCAGgtactgcttt ... tcttttatagGAAGAGGACCGACTAAGAGATGCTCTCAAGTTTGCAAATGCTTGTGGTGCA
EST: TTGTTGCTGGAATATTATCACAACTAGCTGCTGATCTTTCCTTGCTTCAG GAAGAGGACCGACTAAGAGATGCTCTCAAGTTTGCAAATGCTTGTGGTGCAEST: gi|32245628|gb|CD711447.1|CD711447
genomic: TTGTTGCTGGAATATTATCACAACTAGCTGCTGATCTTTCCTTGCTTCAGgtactgcttt ... tcttttatagGAAGAGGACCGACTAAGAGATGCTCTCAAGTTTGCAAATGCTTGTGGTGCA
EST: GATCTTTCCTTGCTTCAG GAAGAGGACCGACTAAGAGATGCTCTCAAGTTTGCAAATGCTTGTGGTGCAEST: gi|27584993|gb|CB007688.1|CB007688
genomic: GATCTTTCCTTGCTTCAGgtactgcttt ... tcttttatagGAAGAGGACCGACTAAGAGATGCTCTCAAGTTTGCAAATGCTTGTGGTGCA
EST: TTGTTGCTGGAATATTATCACAACTAGCTGCTGATCTTTCCTTGCTTCAG GAAGAGGACCGACTAAGAGATGCTCTCAAGTTTGCAAATGCTTGTGGTGCA
genomic: TTGTTGCTGGAATATTATCACAACTAGCTGCTGATCTTTCCTTGCTTCAGgtactgcttt ... tcttttatagGAAGAGGACCGACTAAGAGATGCTCTCAAGTTTGCAAATGCTTGTGGTGCA
ggattgtgtcttatatttgctggagtgcttatgaatctgcttttatcttttatagGAAGAGGACCGACTAAGAGATGCTCTCAAGTTTGCAAATGCTTGTGGTGCATTGACTGTCATGGAGAGAGGTGCAATTCCAGCTTTGCCATCTAGAGAAG
tctgcttttatctttt CT-rich tract
ttttatcttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaagcagcactatactgcattagttactttgatgaagtggctatggattgtgtcttatatttgctggagtgcttatgaatctgcttttatcttttatagGAAGAGGACCGACTAAGAGATGCTCTCAAGTTTGCAAATGCTTGTGGTGCATTGACTGTCATGGAGAGAGGTGCAATTCCAGCTTTGCCATCTAGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - gcagcac
- - - - - - - -ctgcatt
- - - - - - - - - - - - - - - - - - - - -ctatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttatg