1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atctattcatgtaatgaatgcatgcctttttcctctgaacatatcttctgtttattgaaatcggtacctaattatgaaatattgggttaatattttgtagGATCCAAAAGAGGGTAATTGGTGGATGCAATTTGGAAATGACTATGTGCTGGGGTATTGGCCAGCCCTACTTTTCTCGTACCTATCTGACAGTGCTTCCA
species | Vitis vinifera |
transcript | Vv13s0320g00060.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTTCCCGTTATCATGGTTCCCAATATGATATCAGCATACTTGTGTGGAAG GATCCAAAAGAGGGTAATTGGTGGATGCAATTTGGAAATGACTATGTGCTGEST: gi|110358803|gb|EC923284.1|EC923284
genomic: TTTCCCGTTATCACGGTTCCCAATATGATATCAGCATACTTGTGTGGAAGgtaaaaggca ... tattttgtagGATCCAAAAGAGGGTAATTGGTGGATGCAATTTGGAAATGACTATGTGCTG
EST: TTTCCCGTTATCACGGTTCCCAATATGATATCAGCATACTTGTGTGGAAG GATCCAAAAGAGGGTAATTGGTGGATGCAATTTGGAAATGACTATGTGCTGEST: gi|33405619|gb|CF211246.1|CF211246
genomic: TTTCCCGTTATCACGGTTCCCAATATGATATCAGCATACTTGTGTGGAAGgtaaaaggca ... tattttgtagGATCCAAAAGAGGGTAATTGGTGGATGCAATTTGGAAATGACTATGTGCTG
EST: TTTCCCGTTATCACGGTTCCCAATATGATATCAGCATACTTGTGTGGAAG GATCCAAAAGAGGGTAATTGGTGGATGCAATTTGGAAATGACTATGTGCTGEST: gi|110357503|gb|EC921093.1|EC921093
genomic: TTTCCCGTTATCACGGTTCCCAATATGATATCAGCATACTTGTGTGGAAGgtaaaaggca ... tattttgtagGATCCAAAAGAGGGTAATTGGTGGATGCAATTTGGAAATGACTATGTGCTG
EST: TTTCCCGTTATCACGGTTCCCAATATGATATCAGCATACTTGTGTGGAAG GATCCAAAAGAGGGTAATTGGTGGATGCAATTTGGAAATGACTATGTGCTG
genomic: TTTCCCGTTATCACGGTTCCCAATATGATATCAGCATACTTGTGTGGAAGgtaaaaggca ... tattttgtagGATCCAAAAGAGGGTAATTGGTGGATGCAATTTGGAAATGACTATGTGCTG
ttctgtttattgaaatcggtacctaattatgaaatattgggttaatattttgtagGATCCAAAAGAGGGTAATTGGTGGATGCAATTTGGAAATGACTATGTGCTGGGGTATTGGCCAGCCCTACTTTTCTCGTACCTATCTGACAGTGCTTCCA
taattatgaaatattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctattcatgtaatgaatgcatgcctttttcctctgaacatatcttctgtttattgaaatcggtacctaattatgaaatattgggttaatattttgtagGATCCAAAAGAGGGTAATTGGTGGATGCAATTTGGAAATGACTATGTGCTGGGGTATTGGCCAGCCCTACTTTTCTCGTACCTATCTGACAGTGCTTCCA
- - - tcatgta
- - - - - - - - - - catgcct
- - - - - - - - - - - - - - - -cctctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaaata