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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcacctctctgcatattgattttacatatagttttctaaatcatcactcatctctatggagtgctattgaggcagtttgttattcatttaaatgatcttaaagGTTGCCAACCTGAGCCTATATGCAGTTGCTTTCGTTGTGTTCAATTCCAGCAAACCACATACACTTGTTGATATTGAAAATCAG

Basic information

species Vitis vinifera
transcript Vv13s0156g00080.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0156g00080.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G16870.4 (Glycine max), 3'ss of exon 2
gttagcacctctctgcatattgattttacatatagttttctaaatcatcactcatctctatggagtgctattgaggcagtttgttattcatttaaatgatcttaaagGTTGCCAACCTGAGCCTATATGCAGTTGCTTTCGTTGTGTTCAATTCCAGCAAACCACATACACTTGTTGATATTGAAAATCAG
                   |   || ||  |  | ||| |  |   |||| | || | |      |  ||| ||   | |    ||| ||  ||| |    || |||||||||||||||||||| ||||||||||| ||  | || |||| |  || |||   | | |||| || |||| |||||||||||
------------------gtaagttcta-gtgaaatttccatagaaatcaataatatgt------taatat-gaattactaatgtatacaactaactatctttgaagGTTGCCAACCTGAGCCTGTATGCAGTTGCATTGATAGTATTCAGTGTCATCAATGGAAAAACACATGATGATGTTGAAAATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161706475|gb|FC054996.1|FC054996
EST:     ATTCAACAAGCAGAGTAGTTCTTGCTAGCTGTCGTAATGCTTTTACAATG                         GTTGCCAACCTGAGCCTATATGCAGTTGCTTTCGTTGTGTTCAATTCCAGC
genomic: ATTCAACAAGCAGAGTAGTTCTTGCTAGCTGTCGTAATGCTTTTACAATGgttagcacct ... gatcttaaagGTTGCCAACCTGAGCCTATATGCAGTTGCTTTCGTTGTGTTCAATTCCAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catctctatggagtgctattgaggcagtttgttattcatttaaatgatcttaaagGTTGCCAACCTGAGCCTATATGCAGTTGCTTTCGTTGTGTTCAATTCCAGCAAACCACATACACTTGTTGATATTGAAAATCAG
                           tttgttattcatttaa  TA-rich tract