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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttttcctcagatactttttgctcttgtacttgaactttaggttatcatttttttcttttggaaaagaatcgtcctgaattctggttcagGTTACAGGAAGCAATTCTGACTATTCCTCGTGGGATCACTCGGCTTATGGATATGCTTATGGATCGTGAG

Basic information

species Vitis vinifera
transcript Vv13s0139g00160.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0139g00160.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G00610.1 (Glycine max), 3'ss of exon 6
gtattttttcctcagatactttttgctcttgtacttgaactttaggttatcatttt-tttcttttggaaaagaatcgtcctgaattctggttcagGTTACAGGAAGCAATTCTGACTATTCCTCGTGGGATCACTCGGCTTATGGATATGCTTATGGATCGTGAG
|||||   |      |||  ||    | ||||  || |     | ||| | |  |  | |   ||| |       | | |||| |||   ||||||||||||||||||||  ||||||| |||||||| || ||||| || ||||| ||||||||||||||||||
gtattggattt----atagcttccatttttgt--ttaattccaaagttgttaaataatctagcttgaactgcccccttactgacttcctcttcagGTTACAGGAAGCAATATTGACTATCCCTCGTGGTATAACTCGACTAATGGACATGCTTATGGATCGTGAG

upper sequence: Vv13s0139g00160.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA19G08920.1 (Glycine max), 3'ss of exon 4
gtattttttcctcagatactttttgctcttgtacttgaactttaggttatcatttttttcttttggaaaagaatcgtcctgaattctggttcagGTTACAGGAAGCAATTCTGACTATTCCTCGTGGGATCACTCGGCTTATGGATATGCTTATGGATCGTGAG
|||||  ||     |   |||     | || |          ||  |  | |    | |   |||||||  |  | | || | |||   ||||||||||||||||| ||  |||| || |||||||| || |||||||| ||||| ||||||||||||||||||
gtattagttttattgg--cttccattttttatttaaagcacataactattaaaccatctagcttggaaagcacacttgctaagttcctcttcagGTTACAGGAAGCTATATTGACCATCCCTCGTGGTATAACTCGGCTAATGGACATGCTTATGGATCGTGAG

upper sequence: Vv13s0139g00160.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G27530.1 (Arabidopsis thaliana), 3'ss of exon 7
gtattttttcctcagatactttttgctcttgtacttgaactttaggttatcatttttttcttttg--gaaaagaatcgtcctgaattctggttcagGTTACAGGAAGCAATTCTGACTATTCCTCGTGGGATCACTCGGCTTATGGATATGCTTATGGATCGTGAG
               ||   | ||    | |||||  | || |  || ||  || | |   | ||    | ||| |  | |||| |     |||||||| |||||||| ||| |||| | |||||| || || |||||||| ||||||||||| |||||| | |||
-------------gtatgtatcttaggat-gtact--atctctgtgtcatttttctatctgtatgctatagagactgttgctgactgtctcttcagGTTGCAGGAAGCTATTTTGACCACTCCTCGCGGTATTACTCGGCTCATGGATATGCTAATGGATAGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttaggttatcatttttttcttttggaaaagaatcgtcctgaattctggttcagGTTACAGGAAGCAATTCTGACTATTCCTCGTGGGATCACTCGGCTTATGGATATGCTTATGGATCGTGAG
       ttatcatttttttctt  TA-rich tract