Sequence
atgc intronic sequence ATGC exonic sequencegtgagtgttaataattgcatccatgatcaaccaactgatttaatttttttttcctaacttgcattctaaagctaacttatttaatgcagGTATGGAGGCTGGGATGGTAAAAAATGGTTGTCAGATGTTTTTGTCTTGGACACAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0074g00620.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os03g61950.1 (Oryza sativa), 3'ss of exon 5
gtgagtgttaataattgcatccatgatcaaccaactgatttaatttttttttccta--acttgcattctaaagctaacttatt-taatgcagGTATGGAGGCTGGGATGGTAAAAAATGGTTGTCAGATGTTTTTGTCTTGGACACAA
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gtaagcatt--ccatctaatgcaagtttccctttcatttctgggtaccatcgcttatgagttatgaagaacatttggttcatcctgattcagGTATGGCGGTTGGGATGGCAAAAAATGGTTGTCGGATGTATACATCATGGACACAA
upper sequence: Vv13s0074g00620.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G32900.1 (Glycine max), 3'ss of exon 5
------------gtgagtgttaataattgcatccatgatcaaccaactgatttaatttttttttcctaacttgcattctaaagctaact-tatttaatgcagGTATGGAGGCTGGGATGGTAAAAAATGGTTGTCAGATGTTTTTGTCTTGGACACAA
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gtgaggcatatagtgtttgatttgactggtttttttaat--gctaattagctgaagagtaaatt---aaaacatgtagtgaggtggattctgtgtgatgcagGTATGGTGGATGGGATGGAAAAAAGTGGTTATCTGATGTTTATGTCTTGGATACAA
upper sequence: Vv13s0074g00620.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT2G36360.1 (Arabidopsis thaliana), 3'ss of exon 5
gtgagtgttaataattgcatccatgatcaaccaact-gatttaa-tttttttttcctaacttgcatt-ctaaagctaacttatttaatgcagGTATGGAGGCTGGGATGGTAAAAAATGGTTGTCAGATGTTTTTGTCTTGGACACAA
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gtatgtatcaa--actttagacgtaatcatcttcttaggtttaagtttaagcttgcctgcctgcattactaaacctagatcgttg---gcagGTGCGGCGGCTGGGACGGTAAAAAGTGGCTGTCAGATGTTTATGTTATGGACACAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgatttaatttttttttcctaacttgcattctaaagctaacttatttaatgcagGTATGGAGGCTGGGATGGTAAAAAATGGTTGTCAGATGTTTTTGTCTTGGACACAA
cttattt CT-rich tract
ttaatttttttttcct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtgttaataattgcatccatgatcaaccaactgatttaatttttttttcctaacttgcattctaaagctaacttatttaatgcagGTATGGAGGCTGGGATGGTAAAAAATGGTTGTCAGATGTTTTTGTCTTGGACACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG