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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataactgactgttctaataggatagcatgcttggatcttcagcatgctcagtgaatagttaatgcttaatgattttgtaatgggaatgagcagAGGAATAGATGCACCAGAGAATTCAATGCCATATGGGAAAGAAGCAAAGGAGGAGTTAGCTATGCTTGTTCAGGGAAAGTGTTTGAGAGTCCTAGTATAT

Basic information

species Vitis vinifera
transcript Vv13s0067g02160.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g02160.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os01g07212.1 (Oryza sativa), 3'ss of exon 4
gtataactgactgttctaataggatagcatgcttggatcttcagcatgctcagtgaatagttaatgcttaatgattttgtaatgggaatgagcagAGGAATAGATGCACCAGAGAATTCAATGCCATATGGGAAAGAAGCAAAGGAGGAGTTAGCTATGCTTGTTCAGGGAAAGTGTTTGAGAGTCCTAGTATAT
|| || ||| ||  |  | |    |   |     | |  |    |   ||  |   |||  |||||  ||||||  | |||   | ||||  |||||| || |||||||||||||  |||||||| ||||| | |||||||||||||||| || | ||||| || ||||||||| |  |||   |    || |||
gtttatctggcttctggattcttgttcgagtgaggtacttctttccaactgggctgata--taatg--taatgaaat-gtat--gaaatg--cagAGGCATCGATGCACCAGAGACCTCAATGCCTTATGGCAGAGAAGCAAAGGAGGAGCTAACAATGCTGGTGCAGGGAAAGAGACTGAAGATTTCTGTGTAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719522|gb|FC066433.1|FC066433
EST:     AATTTTCAAAATGAGGAGGTTCTTGCTAAGAAGTATCGAATTCGACTAAG                         AGGAATAGATGCACCAGAGAATTCAATGCCATATG
genomic: AATTTTCAAAATGAGGAGGTTCTTGCTAAGAAGTATCGAATTCGACTAAGgtataactga ... gaatgagcagAGGAATAGATGCACCAGAGAATTCAATGCCATATG
EST: gi|110394015|gb|EC958364.1|EC958364
EST:     AATTTTCAAAATGAGGAGGTTCTTGCTAAGAAGTATCGAATTCGACTAAG                         AGGAATAGATGCACCAGAGAATTCAATGCCATATGGGAAAGAAGCAAAGGA
genomic: AATTTTCAAAATGAGGAGGTTCTTGCTAAGAAGTATCGAATTCGACTAAGgtataactga ... gaatgagcagAGGAATAGATGCACCAGAGAATTCAATGCCATATGGGAAAGAAGCAAAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagcatgctcagtgaatagttaatgcttaatgattttgtaatgggaatgagcagAGGAATAGATGCACCAGAGAATTCAATGCCATATGGGAAAGAAGCAAAGGAGGAGTTAGCTATGCTTGTTCAGGGAAAGTGTTTGAGAGTCCTAGTATAT
                         gcttaat  putative branch site (score: 4)
                           ttaatgattttgtaat  TA-rich tract