Sequence
atgc intronic sequence ATGC exonic sequence...tacactggcaggattgaacatatctaacacatcatacattccccatttatctcctgtttctgaaagctaggtgatgattttctgtctgcttcttatgcagTATGATCCCCCTCAAGATCCAAATGTCTTCATACACAGAGTTGGTCGGACTGCTCGGATGGGCAGACAAGGAAGTGCTGTTGTTTTTCTATTACCAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g01900.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os01g07080.2 (Oryza sativa), 3'ss of exon 6
tacactggcaggattgaacatatctaacacatcatacattccccatttatctcctgtttctgaaagctaggtgatgattttctgtctgcttcttatgcagTATGATCCCCCTCAAGATCCAAATGTCTTCATACACAGAGTTGGTCGGACTGCTCGGATGGGCAGACAAGGAAGTGCTGTTGTTTTTCTATTACCAAAG
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-------------------gtaatgctttgaacataactccctaaattgtttccttgtgcttgtcattagttgat-ataaaacatttgtttcttccccagTATGATCCACCTCAAGATCCCAATGTGTTCATACATAGAGCTGGCCGTACTGCACGTTATGATCAAGAAGGAGATGCTATTGTATTCCTCTTACCGAAG
upper sequence: Vv13s0067g01900.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G02760.1 (Glycine max), 3'ss of exon 6
tacactggcaggattgaacatatc-taacacatcatacattccccatttatctcctgtttctgaaagctaggtgatgattttctgtctg-----cttcttatgcagTATGATCCCCCTCAAGATCCAAATGTCTTCATACACAGAGTTGGTCGGACTGCTCGGATGGGCAGACAAGGAAGTGCTGTTGTTTTTCTATTACCAAAG
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-gtattgtct--attgactattgcatttcaattttcatcttctttggttctgtctctctcttggttgctaaaccatgcattgtggttgaaatgttttcttgtgcagTATGATCCTCCTCAAGATCCAAATGTTTTCATACATAGAGTAGGTCGAACTGCTCGGCTGGGTAAACAAGGTCATGCTGTTGTCTTCTTATTACCAAAG
upper sequence: Vv13s0067g01900.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G35640.1 (Glycine max), 3'ss of exon 6
------------------------------tacactggcaggattgaacat---atctaacacatcatacattccccatttatctcctgtttctga-aagctaggtgatgattttctgtc-------tgcttcttatgcagTATGATCCCCCTCAAGATCCAAATGTCTTCATACACAGAGTTGGTCGGACTGCTCGGATGGGCAGACAAGGAAGTGCTGTTGTTTTTCTATTACCAAAG
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gtagctctgtgcttctgtgaccttgtatatgatactgtct--attgactattgcatttcat-cttctttggttctctctctctctcccttggctgctaaaatagaccatacagtgtggttaaaatgttttttcttgtgcagTATGATCCTCCTCAAGATCCAAACGTTTTCATACATAGAGTAGGTCGAACTGCTCGGCTGGGTAAACAAGGTCATGCTGTTGTCTTCTTATTACCAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatctcctgtttctgaaagctaggtgatgattttctgtctgcttcttatgcagTATGATCCCCCTCAAGATCCAAATGTCTTCATACACAGAGTTGGTCGGACTGCTCGGATGGGCAGACAAGGAAGTGCTGTTGTTTTTCTATTACCAAAG
ttttctgtctgcttct CT-rich tract
atgatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tacactggcaggattgaacatatctaacacatcatacattccccatttatctcctgtttctgaaagctaggtgatgattttctgtctgcttcttatgcagTATGATCCCCCTCAAGATCCAAATGTCTTCATACACAGAGTTGGTCGGACTGCTCGGATGGGCAGACAAGGAAGTGCTGTTGTTTTTCTATTACCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - ggcagga
- - - - - - - - - - - -ctaacac
- - - - - - - - - - - - - - - - catacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtctgc