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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaattttaaagttaattaaaatagattgatctgtttgtcttcaaatttttctacaaaaatttccagtataatataggcttcatgaaaacatgcgatgatatactgagttcctgttcttcacagATTTGCAGCAGCACTCATCGATCAGCCAGTCTGGGTAATGAACGTCGTCCCCATTCACGTACCAGACACCTTGTCTGTTATTTTTGACCGAGGGTTGATA

Basic information

species Vitis vinifera
transcript Vv13s0067g01690.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717569|gb|FC067880.1|FC067880
EST:     AACTGGTCAAGCATACGGAACATAATGGATATGAATGCTGGTTATGGAGG                         ATTTGCAGCAGCACTCATCGATCAGCCAGTCTGGGTAATGAACGTCGTCCC
genomic: AACTGGTCAAGCATACGGAACGTAATGGATATGAATGCTGGTTATGGAGGgtaagaaatt ... ttcttcacagATTTGCAGCAGCACTCATCGATCAGCCAGTCTGGGTAATGAACGTCGTCCC
EST: gi|51051449|gb|CO819062.1|CO819062
EST:     AACTGGTCAAGCATACGGAACGTAATGGATATGAATGCTGGTTATGGAGG                         ATTTGCAGCAGCACTCATCGATCAGCCAGTCTGGGTAATGAACGTCGTCCC
genomic: AACTGGTCAAGCATACGGAACGTAATGGATATGAATGCTGGTTATGGAGGgtaagaaatt ... ttcttcacagATTTGCAGCAGCACTCATCGATCAGCCAGTCTGGGTAATGAACGTCGTCCC
EST: gi|110390996|gb|EC955947.1|EC955947
EST:     AACTGGTCAAGCATACGGAACATAATGGATATGAATGCTGGTTATGGAGG                         ATTTGCAGCAGCACTCATCGATCAGCCAGTCTGGGTAATGAACGTCGTCCC
genomic: AACTGGTCAAGCATACGGAACGTAATGGATATGAATGCTGGTTATGGAGGgtaagaaatt ... ttcttcacagATTTGCAGCAGCACTCATCGATCAGCCAGTCTGGGTAATGAACGTCGTCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatataggcttcatgaaaacatgcgatgatatactgagttcctgttcttcacagATTTGCAGCAGCACTCATCGATCAGCCAGTCTGGGTAATGAACGTCGTCCCCATTCACGTACCAGACACCTTGTCTGTTATTTTTGACCGAGGGTTGATA
                                       ttcctgttcttcac  CT-rich tract
                          atgatata  TA-rich tract