Sequence
atgc intronic sequence ATGC exonic sequence...acttgcagaagggcatcactgactatttgaatggttgatattgacctatactttttctttttcttcatcttgttctcatcactaattatacctgaaacagAAAATGGGGTTTGCATCCTGTAAGCGGAACTCGGGAGCAACAGAGGGGATCAATGTTCTAATTGAGAAGAATCTTGATGGGAAATGGGAATATGGGTTGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g01470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G35520.1 (Glycine max), 3'ss of exon 7
acttgcagaagggcatcactgactatttgaatggttgatattgacctatactttttctttttcttcatcttgttctca--tcactaattatacctg--aaacagAAAATGGGGTTTGCATCCTGTAAGCGGAACTCGGGAGCAACAGAGGGGATCAATGTTCTAATTGAGAAGAA---TCTTGATGGGAAATGGGAATATGGGTTGT
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---aaaagaaagatactattttctgtaatatttattga-actaagctgtctcaaatcacaaattgaatattgattgcactttcttaactgtgtatgtttaacagAAACTGGGATTTGCATCTTGTAAGCGGATCTCAGGTGCCACAGAAGGAGTTAATGTGCTGATGGAGAAGAAAAGTCTTGATGGGAACTGGGAATATGGTG---
upper sequence: Vv13s0067g01470.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G02900.1 (Glycine max), 3'ss of exon 6
acttgcagaagggcatcactgactatttgaatggttgatattgacctatactttttctttttcttcatcttgttctca--tcactaattatacctg--aaacagAAAATGGGGTTTGCATCCTGTAAGCGGAACTCGGGAGCAACAGAGGGGATCAATGTTCTAATTGAGAAGAA---TCTTGATGGGAAATGGGAATATGGGTTGT
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---aaaagaaagatactattttctgtaatatttattga-actaaacagtgtcaaatcacaaattgaatgttaattgcactttcttaactgtgtctgtttaacagAAACTGGGATTTGCATCTTGTAAGCGGATCTTGGGTGCCACAGAAGGAGTTAATGTGCTCATGGAGAAGAAAAGTCTTGATGGGAACTGGGAATATGGTG--- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctatactttttctttttcttcatcttgttctcatcactaattatacctgaaacagAAAATGGGGTTTGCATCCTGTAAGCGGAACTCGGGAGCAACAGAGGGGATCAATGTTCTAATTGAGAAGAATCTTGATGGGAAATGGGAATATGGGTTGT
cactaat putative branch site (score: 2)
tttttctttttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acttgcagaagggcatcactgactatttgaatggttgatattgacctatactttttctttttcttcatcttgttctcatcactaattatacctgaaacagAAAATGGGGTTTGCATCCTGTAAGCGGAACTCGGGAGCAACAGAGGGGATCAATGTTCTAATTGAGAAGAATCTTGATGGGAAATGGGAATATGGGTTGT
- -tgcagaa
- - - - - - -catcact
- - - - - - - - - - - - - -tgaatgg