1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttatacttgtgcataataatgtagccaagtgtagtgtatcatgacaatatgtctaatatgtcatatggctttcttgactagaactttgcctcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGCAGAAGGACAACTGGAGAGGCTGAACTAAGGACCTGCTTGGCGTGTTAT
species | Vitis vinifera |
transcript | Vv13s0067g00180.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGNTGAGNTGCCAGTCGGCCATAGATGCTCTEST: gi|110375070|gb|EC940027.1|EC940027
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTG-GTTGCCAGTCGGCCATAGATGCTCT
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|33402644|gb|CF208271.1|CF208271
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|110383780|gb|EC948180.1|EC948180
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|110380907|gb|EC946209.1|EC946209
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|349833114|gb|FQ416492.1|FQ416492
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGGCATAGATGCTCTACAAGAGATAAEST: gi|110719007|gb|EE096488.1|EE096488
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAA
EST: AGAAATGAAGAATAACCCATTTC-TGCGGGTTGACCTACCAGACCTTCCG GAGAGGGTTGGEST: gi|110414288|gb|EC980115.1|EC980115
genomic: AGAGATGGAGACTAACCCATT-CATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGG
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|110421750|gb|EC988050.1|EC988050
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|110724872|gb|EE101081.1|EE101081
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAAGCT-CAG GAGAGGGTTGGTTGCCCGTCNGCCATAAATGCTCTACAAGAGATAAGGCGEST: gi|34545408|gb|CF513640.1|CF513640
genomic: AGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGA-GCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCG
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|110396845|gb|EC962547.1|EC962547
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|30252993|gb|CB970544.1|CB970544
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|110415169|gb|EC981048.1|EC981048
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|110716814|gb|EE092126.1|EE092126
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCC-TTCATGCGGGTTGACCTAC-AGAGCTTCAA GAGAGGGTTGGTEST: gi|110392028|gb|EC957151.1|EC957151
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGT
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|34545999|gb|CF514231.1|CF514231
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|110691653|gb|EE070003.1|EE070003
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|110416949|gb|EC982963.1|EC982963
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCATTCATCCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|30133817|gb|CB919156.1|CB919156
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|34545007|gb|CF513239.1|CF513239
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|110398276|gb|EC964521.1|EC964521
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|110411105|gb|EC976807.1|EC976807
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCATTCATCCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|71871274|gb|DT020329.1|DT020329
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|30329394|gb|CD012656.1|CD012656
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCATTCATCCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|33402734|gb|CF208361.1|CF208361
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTTTACAAGAGATAAGGCGGEST: gi|110690740|gb|EE068165.1|EE068165
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCCTCC-TGCGGGTTGACCTACCAGAACTTCAG GAGAGGGTTGGTTGCCCGTCGGEST: gi|110711424|gb|EE087889.1|EE087889
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGG
EST: AAGAGAAGGAGACTAACCCATTCATGCGGGGTGACCTAACAAAGCTTCCG GAGAAGGTTGGTTGCEST: gi|110386430|gb|EC951024.1|EC951024
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGC
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|110423791|gb|EC990142.1|EC990142
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|34545495|gb|CF513727.1|CF513727
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|110382708|gb|EC947025.1|EC947025
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGEST: gi|34319926|gb|CF372680.1|CF372680
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
EST: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAG GAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
genomic: AAGAGATGGAGACTAACCCATTCATGCGGGTTGACCTACCAGAGCTTCAGgtaggctttt ... tcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGG
aatatgtctaatatgtcatatggctttcttgactagaactttgcctcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGCAGAAGGACAACTGGAGAGGCTGAACTAAGGACCTGCTTGGCGTGTTAT
tcttgac putative branch site (score: 3)
ctttgcctcttttac putative PPT
tctaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatacttgtgcataataatgtagccaagtgtagtgtatcatgacaatatgtctaatatgtcatatggctttcttgactagaactttgcctcttttacagGAGAGGGTTGGTTGCCAGTCGGCCATAGATGCTCTACAAGAGATAAGGCGGCAGAAGGACAACTGGAGAGGCTGAACTAAGGACCTGCTTGGCGTGTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - -cttgtgc
- - - - - - - - - - - - ccaagtg
- - - - - - - - - - - - - - - - - - - tcatgac