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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagttggcctttacctttgtcttttatgggttccatatccattttggtgttgagccacacattcaatgagatattattataaatgtctcatatacacaagtatgatataaaggttgtttaaagtgacaggattgaatttctgatcacatgtaatgcttttctttatttcagTTCTGCCTTCATTCTCTGGAAATGTTCCAGAAGCACTCAAAAAGATATTTCCTTCAGCAAATATAACTAGACTTGGGGAATG

Basic information

species Vitis vinifera
transcript Vv13s0064g00370.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0064g00370.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G11720.1 (Glycine max), 3'ss of exon 6
gtatagttggcctttacctttgtcttttatgggttccatatccattttggtgttgagccacacattcaatgagatattattataaatgtctcatatacacaagtatgatataaaggttgtttaaagtgacaggattgaatt-tctgatcacatgtaatgcttttctttatttcagTTCTGCCTTCATTCTCTGGAAATGTTCCAGAAGCACTCAAAAAGATATTTCCTTCAGCAAATATAACTAGACTTGGGGAATG
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-----------------------------------------------------------------------atatat-atgctttgtgattttcaaattcatggagggta-aaatgttgtctactttttctaaatttagtggtctgatttaacat--tgactctttattttctagTGCTGCCATCCTTCTCTGGGAATGTTCCAGCTGCTTTGACAAAGATATTCCCTTCGGCAAAAATAACTAGACTTGGTGACTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaaagtgacaggattgaatttctgatcacatgtaatgcttttctttatttcagTTCTGCCTTCATTCTCTGGAAATGTTCCAGAAGCACTCAAAAAGATATTTCCTTCAGCAAATATAACTAGACTTGGGGAATG
                     ttctgat  putative branch site (score: 3)
                                     tgcttttctttatttc  putative PPT
                                        ttttctttatttca  TA-rich tract